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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 5 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nucleolus 5.9889E-6 5 211 4 6292
non-membrane-bounded organelle 8.1528E-5 5 959 5 6292
intracellular non-membrane-bounded organelle 8.1528E-5 5 959 5 6292
nuclear lumen 1.2511E-4 5 453 4 6292
organelle lumen 5.503E-4 5 660 4 6292
intracellular organelle lumen 5.503E-4 5 660 4 6292
membrane-enclosed lumen 6.9283E-4 5 700 4 6292
box H/ACA snoRNP complex 1.5888E-3 5 2 1 6292
nucleus 3.5796E-3 5 2041 5 6292
nuclear part 4.0435E-3 5 1103 4 6292
nuclear envelope 9.3452E-3 5 199 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosome biogenesis 4.8924E-7 5 346 5 6292
ribonucleoprotein complex biogenesis 7.2351E-7 5 374 5 6292
rRNA processing 8.0467E-7 5 128 4 6292
rRNA metabolic process 1.0581E-6 5 137 4 6292
ncRNA processing 6.4562E-6 5 215 4 6292
ncRNA metabolic process 1.3169E-5 5 257 4 6292
cellular component biogenesis 1.6117E-5 5 694 5 6292
RNA processing 6.2402E-5 5 380 4 6292
RNA metabolic process 7.942E-5 5 954 5 6292
gene expression 3.5034E-4 5 1283 5 6292
nucleic acid metabolic process 5.7208E-4 5 1415 5 6292
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 9.5045E-4 5 1566 5 6292
cellular nitrogen compound metabolic process 1.7545E-3 5 1770 5 6292
nitrogen compound metabolic process 1.8612E-3 5 1791 5 6292
rRNA pseudouridine synthesis 3.1756E-3 5 4 1 6292
regulation of transcription, mating-type specific 3.9682E-3 5 5 1 6292
cellular macromolecule metabolic process 6.2991E-3 5 2285 5 6292
pseudouridine synthesis 7.1338E-3 5 9 1 6292
macromolecule metabolic process 7.2329E-3 5 2349 5 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

pseudouridylate synthase activity 3.9682E-3 5 5 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle