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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 8 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nucleolus 3.3636E-10 8 211 7 6292
nuclear lumen 7.205E-8 8 453 7 6292
non-membrane-bounded organelle 2.8409E-7 8 959 8 6292
intracellular non-membrane-bounded organelle 2.8409E-7 8 959 8 6292
organelle lumen 9.8757E-7 8 660 7 6292
intracellular organelle lumen 9.8757E-7 8 660 7 6292
Noc1p-Noc2p complex 1.4147E-6 8 2 2 6292
membrane-enclosed lumen 1.4845E-6 8 700 7 6292
Noc complex 1.4121E-5 8 5 2 6292
nuclear part 3.3951E-5 8 1103 7 6292
preribosome, large subunit precursor 5.0705E-5 8 9 2 6292
nucleus 1.2145E-4 8 2041 8 6292
90S preribosome 1.9058E-4 8 17 2 6292
preribosome 7.7767E-4 8 34 2 6292
nucleolar part 1.3628E-3 8 45 2 6292
ribonucleoprotein complex 2.361E-3 8 514 4 6292
Noc2p-Noc3p complex 2.5415E-3 8 2 1 6292
intracellular organelle part 4.4856E-3 8 2282 7 6292
organelle part 4.4856E-3 8 2282 7 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosome biogenesis 1.094E-8 8 346 7 6292
ribonucleoprotein complex biogenesis 1.8872E-8 8 374 7 6292
ribosome assembly 6.6114E-7 8 64 4 6292
organelle assembly 8.9725E-7 8 69 4 6292
cellular component biogenesis 1.3986E-6 8 694 7 6292
ribonucleoprotein complex assembly 2.866E-6 8 92 4 6292
ribosomal large subunit assembly 1.4063E-5 8 41 3 6292
ribosomal subunit assembly 3.4321E-5 8 55 3 6292
cellular macromolecular complex assembly 4.33E-5 8 182 4 6292
ribosomal large subunit biogenesis 5.6801E-5 8 65 3 6292
cellular macromolecular complex subunit organization 1.7229E-4 8 259 4 6292
macromolecular complex assembly 2.3642E-4 8 281 4 6292
rRNA metabolic process 5.2205E-4 8 137 3 6292
macromolecular complex subunit organization 5.9444E-4 8 357 4 6292
cellular component assembly 7.9316E-4 8 385 4 6292
maturation of SSU-rRNA 2.3343E-3 8 59 2 6292
ncRNA metabolic process 3.2376E-3 8 257 3 6292
regulation of transcription, mating-type specific 6.3431E-3 8 5 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

5S rRNA binding 1.4147E-6 8 2 2 6292
RNA binding 3.1798E-5 8 367 5 6292
rRNA binding 1.6826E-4 8 16 2 6292
nucleic acid binding 5.58E-4 8 666 5 6292
7S RNA binding 1.2715E-3 8 1 1 6292
rRNA primary transcript binding 6.3431E-3 8 5 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle