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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 10 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nuclear lumen 4.5186E-10 10 453 9 6292
organelle lumen 1.3273E-8 10 660 9 6292
intracellular organelle lumen 1.3273E-8 10 660 9 6292
membrane-enclosed lumen 2.2469E-8 10 700 9 6292
nuclear part 1.2833E-6 10 1103 9 6292
nucleolus 8.8878E-6 10 211 5 6292
nucleus 1.2708E-5 10 2041 10 6292
nucleoplasm 2.654E-5 10 264 5 6292
nuclear outer membrane 2.7608E-4 10 86 3 6292
nuclear membrane 3.9408E-4 10 97 3 6292
organelle part 7.2492E-4 10 2282 9 6292
intracellular organelle part 7.2492E-4 10 2282 9 6292
outer membrane 2.3071E-3 10 178 3 6292
organelle outer membrane 2.3071E-3 10 178 3 6292
nuclear envelope 3.1727E-3 10 199 3 6292
nuclear membrane-endoplasmic reticulum network 4.8992E-3 10 232 3 6292
membrane-bounded organelle 5.9511E-3 10 3771 10 6292
intracellular membrane-bounded organelle 5.9511E-3 10 3771 10 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosome biogenesis 2.2334E-13 10 346 10 6292
ribonucleoprotein complex biogenesis 4.9117E-13 10 374 10 6292
ribosomal large subunit biogenesis 1.0561E-12 10 65 7 6292
ribosome assembly 1.7741E-10 10 64 6 6292
cellular component biogenesis 2.5149E-10 10 694 10 6292
organelle assembly 2.8288E-10 10 69 6 6292
ribonucleoprotein complex assembly 1.6615E-9 10 92 6 6292
cellular macromolecular complex assembly 1.0295E-7 10 182 6 6292
ribosomal large subunit assembly 3.1687E-7 10 41 4 6292
cellular macromolecular complex subunit organization 8.3957E-7 10 259 6 6292
ribosomal subunit assembly 1.0557E-6 10 55 4 6292
macromolecular complex assembly 1.3586E-6 10 281 6 6292
macromolecular complex subunit organization 5.5349E-6 10 357 6 6292
cellular component assembly 8.5951E-6 10 385 6 6292
rRNA processing 3.1217E-5 10 128 4 6292
rRNA metabolic process 4.0811E-5 10 137 4 6292
ncRNA processing 2.3677E-4 10 215 4 6292
organelle organization 4.2101E-4 10 1127 7 6292
ncRNA metabolic process 4.6994E-4 10 257 4 6292
establishment of ribosome localization 7.2406E-4 10 26 2 6292
ribosome localization 7.2406E-4 10 26 2 6292
ribosomal subunit export from nucleus 7.2406E-4 10 26 2 6292
RNA processing 2.0543E-3 10 380 4 6292
establishment of organelle localization 3.228E-3 10 55 2 6292
cellular component organization 3.6048E-3 10 1582 7 6292
organelle localization 7.565E-3 10 85 2 6292
cell proliferation 7.9239E-3 10 5 1 6292
traversing start control point of mitotic cell cycle 9.5019E-3 10 6 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

GTPase activity 3.9577E-3 10 61 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle