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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 5 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

preribosome 1.4314E-6 5 34 3 6292
preribosome, small subunit precursor 7.5694E-6 5 6 2 6292
nucleus 3.5796E-3 5 2041 5 6292
late endosome membrane 3.9682E-3 5 5 1 6292
ribonucleoprotein complex 4.783E-3 5 514 3 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosome biogenesis 4.8924E-7 5 346 5 6292
ribonucleoprotein complex biogenesis 7.2351E-7 5 374 5 6292
rRNA processing 8.0467E-7 5 128 4 6292
rRNA metabolic process 1.0581E-6 5 137 4 6292
ncRNA processing 6.4562E-6 5 215 4 6292
ncRNA metabolic process 1.3169E-5 5 257 4 6292
cellular component biogenesis 1.6117E-5 5 694 5 6292
RNA processing 6.2402E-5 5 380 4 6292
ribosomal small subunit biogenesis 1.6296E-4 5 26 2 6292
maturation of SSU-rRNA 8.4895E-4 5 59 2 6292
RNA metabolic process 2.3107E-3 5 954 4 6292
proteasome assembly 4.7604E-3 5 6 1 6292
ribosomal small subunit export from nucleus 5.552E-3 5 7 1 6292
gene expression 7.2106E-3 5 1283 4 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nucleocytoplasmic transporter activity 7.9466E-4 5 1 1 6292
ribonucleoprotein binding 5.552E-3 5 7 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle