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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 6 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribonucleoprotein complex 2.8931E-7 6 514 6 6292
cytosolic small ribosomal subunit 4.0152E-6 6 38 3 6292
small nucleolar ribonucleoprotein complex 2.8041E-5 6 72 3 6292
small ribosomal subunit 2.9233E-5 6 73 3 6292
cytosolic ribosome 7.7539E-5 6 101 3 6292
90S preribosome 1.0242E-4 6 17 2 6292
cytosolic part 1.3633E-4 6 122 3 6292
macromolecular complex 3.0579E-4 6 1635 6 6292
preribosome 4.1945E-4 6 34 2 6292
non-membrane-bounded organelle 4.2731E-4 6 959 5 6292
intracellular non-membrane-bounded organelle 4.2731E-4 6 959 5 6292
ribosomal subunit 4.5377E-4 6 183 3 6292
nucleolus 6.8999E-4 6 211 3 6292
cytosol 1.644E-3 6 284 3 6292
ribosome 1.747E-3 6 290 3 6292
nuclear outer membrane 2.6729E-3 6 86 2 6292
nuclear membrane 3.389E-3 6 97 2 6292
nuclear lumen 6.2906E-3 6 453 3 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.3735E-7 6 13 3 6292
maturation of SSU-rRNA 1.5357E-5 6 59 3 6292
gene expression 7.1216E-5 6 1283 6 6292
rRNA processing 1.5729E-4 6 128 3 6292
translation 1.7103E-4 6 376 4 6292
rRNA metabolic process 1.9253E-4 6 137 3 6292
ncRNA processing 7.2911E-4 6 215 3 6292
ncRNA metabolic process 1.2291E-3 6 257 3 6292
cellular macromolecule metabolic process 2.2844E-3 6 2285 6 6292
macromolecule metabolic process 2.6967E-3 6 2349 6 6292
ncRNA 5'-end processing 2.8585E-3 6 3 1 6292
endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.8585E-3 6 3 1 6292
endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.8585E-3 6 3 1 6292
rRNA 5'-end processing 2.8585E-3 6 3 1 6292
RNA 5'-end processing 2.8585E-3 6 3 1 6292
ribosome biogenesis 2.9111E-3 6 346 3 6292
ribonucleoprotein complex biogenesis 3.641E-3 6 374 3 6292
maturation of 5.8S rRNA 3.8098E-3 6 4 1 6292
cleavage involved in rRNA processing 3.8098E-3 6 4 1 6292
maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3.8098E-3 6 4 1 6292
endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3.8098E-3 6 4 1 6292
endonucleolytic cleavage involved in rRNA processing 3.8098E-3 6 4 1 6292
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3.8098E-3 6 4 1 6292
RNA processing 3.811E-3 6 380 3 6292
cellular protein metabolic process 9.4683E-3 6 1074 4 6292
primary metabolic process 9.4808E-3 6 2896 6 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

structural constituent of ribosome 1.7826E-5 6 212 4 6292
structural molecule activity 1.1393E-4 6 339 4 6292
snoRNA binding 3.4811E-4 6 31 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle