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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 8 proteins

Complex Member Proteins

Protein

GO Cellular Component GO Biological Process GO Molecular Function
ECM16
  • mitochondrion
  • nucleolus
  • small nucleolar ribonucleoprotein complex
  • maturation of SSU-rRNA
  • ribosome biogenesis
  • RNA helicase activity
  • KRE33
  • nucleolus
  • ribosome biogenesis
  • molecular_function
  • NOP14
  • mitochondrion
  • Noc4p-Nop14p complex
  • nuclear outer membrane
  • nucleolus
  • small nucleolar ribonucleoprotein complex
  • maturation of SSU-rRNA
  • ribosomal small subunit biogenesis
  • ribosome biogenesis
  • snoRNA binding
  • RPS11A, RPS11B
  • ribonucleoprotein complex
  • cytosolic small ribosomal subunit
  • cytoplasm
  • ribosome
  • 90S preribosome
  • intracellular
  • regulation of translation
  • maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
  • ribosomal small subunit assembly
  • translation
  • RNA binding
  • structural constituent of ribosome
  • rRNA binding
  • RPS13
  • ribonucleoprotein complex
  • cytosolic small ribosomal subunit
  • cytoplasm
  • 90S preribosome
  • ribosome
  • intracellular
  • translation
  • structural constituent of ribosome
  • RPS7A
  • small nucleolar ribonucleoprotein complex
  • translation
  • structural constituent of ribosome
  • RPS8B, RPS8A
  • ribonucleoprotein complex
  • cytosolic small ribosomal subunit
  • cytoplasm
  • 90S preribosome
  • ribosome
  • intracellular
  • regulation of translation
  • maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
  • translation
  • structural constituent of ribosome
  • UTP22
  • nucleus
  • nuclear outer membrane
  • nucleolus
  • small nucleolar ribonucleoprotein complex
  • maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
  • ribosome biogenesis
  • rRNA processing
  • snoRNA binding
  • Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    90S preribosome 2.5367E-9 8 17 4 6292
    preribosome 4.9003E-8 8 34 4 6292
    ribonucleoprotein complex 1.7384E-7 8 514 7 6292
    small nucleolar ribonucleoprotein complex 1.0661E-6 8 72 4 6292
    cytosolic small ribosomal subunit 1.1149E-5 8 38 3 6292
    non-membrane-bounded organelle 1.3016E-5 8 959 7 6292
    intracellular non-membrane-bounded organelle 1.3016E-5 8 959 7 6292
    nucleolus 7.7406E-5 8 211 4 6292
    small ribosomal subunit 8.0492E-5 8 73 3 6292
    cytosolic ribosome 2.1208E-4 8 101 3 6292
    cytosolic part 3.71E-4 8 122 3 6292
    macromolecular complex 4.9027E-4 8 1635 7 6292
    ribosomal subunit 1.2169E-3 8 183 3 6292
    nuclear lumen 1.4695E-3 8 453 4 6292
    Noc4p-Nop14p complex 2.5415E-3 8 2 1 6292
    cytosol 4.3023E-3 8 284 3 6292
    intracellular organelle part 4.4856E-3 8 2282 7 6292
    organelle part 4.4856E-3 8 2282 7 6292
    ribosome 4.565E-3 8 290 3 6292
    nuclear outer membrane 4.9014E-3 8 86 2 6292
    organelle lumen 5.9438E-3 8 660 4 6292
    intracellular organelle lumen 5.9438E-3 8 660 4 6292
    nuclear membrane 6.2001E-3 8 97 2 6292
    Noc complex 6.3431E-3 8 5 1 6292
    membrane-enclosed lumen 7.3614E-3 8 700 4 6292
    preribosome, small subunit precursor 7.6075E-3 8 6 1 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    maturation of SSU-rRNA 3.3441E-9 8 59 5 6292
    rRNA processing 1.7189E-7 8 128 5 6292
    rRNA metabolic process 2.4182E-7 8 137 5 6292
    maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3.8367E-7 8 13 3 6292
    ribosome biogenesis 6.7573E-7 8 346 6 6292
    ribonucleoprotein complex biogenesis 1.0727E-6 8 374 6 6292
    ncRNA processing 2.291E-6 8 215 5 6292
    ncRNA metabolic process 5.5383E-6 8 257 5 6292
    RNA processing 3.7674E-5 8 380 5 6292
    cellular component biogenesis 4.0619E-5 8 694 6 6292
    gene expression 9.518E-5 8 1283 7 6292
    ribosomal small subunit biogenesis 4.5282E-4 8 26 2 6292
    translation 7.2474E-4 8 376 4 6292
    regulation of translation 2.1802E-3 8 57 2 6292
    posttranscriptional regulation of gene expression 2.4935E-3 8 61 2 6292
    RNA metabolic process 2.9766E-3 8 954 5 6292
    regulation of cellular protein metabolic process 3.0901E-3 8 68 2 6292
    regulation of protein metabolic process 3.6499E-3 8 74 2 6292
    cellular macromolecule metabolic process 4.5244E-3 8 2285 7 6292
    macromolecule metabolic process 5.4192E-3 8 2349 7 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    structural constituent of ribosome 7.8854E-5 8 212 4 6292
    structural molecule activity 4.8751E-4 8 339 4 6292
    snoRNA binding 6.4583E-4 8 31 2 6292
    RNA binding 8.8446E-3 8 367 3 6292

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle