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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 8 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

non-membrane-bounded organelle 2.8409E-7 8 959 8 6292
intracellular non-membrane-bounded organelle 2.8409E-7 8 959 8 6292
90S preribosome 9.1004E-7 8 17 3 6292
ribonucleoprotein complex 7.018E-6 8 514 6 6292
preribosome 7.9274E-6 8 34 3 6292
cytosolic small ribosomal subunit 1.1149E-5 8 38 3 6292
nucleolus 7.7406E-5 8 211 4 6292
small ribosomal subunit 8.0492E-5 8 73 3 6292
cytosolic ribosome 2.1208E-4 8 101 3 6292
ribosome 2.671E-4 8 290 4 6292
cytosolic part 3.71E-4 8 122 3 6292
ribosomal subunit 1.2169E-3 8 183 3 6292
nuclear lumen 1.4695E-3 8 453 4 6292
small nucleolar ribonucleoprotein complex 3.4584E-3 8 72 2 6292
cytosol 4.3023E-3 8 284 3 6292
organelle part 4.4856E-3 8 2282 7 6292
intracellular organelle part 4.4856E-3 8 2282 7 6292
macromolecular complex 5.1894E-3 8 1635 6 6292
organelle lumen 5.9438E-3 8 660 4 6292
intracellular organelle lumen 5.9438E-3 8 660 4 6292
membrane-enclosed lumen 7.3614E-3 8 700 4 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

rRNA processing 1.7081E-9 8 128 6 6292
rRNA metabolic process 2.5819E-9 8 137 6 6292
maturation of SSU-rRNA 3.3441E-9 8 59 5 6292
ribosome biogenesis 1.094E-8 8 346 7 6292
ribonucleoprotein complex biogenesis 1.8872E-8 8 374 7 6292
ncRNA processing 3.9303E-8 8 215 6 6292
ncRNA metabolic process 1.1463E-7 8 257 6 6292
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 3.8367E-7 8 13 3 6292
RNA processing 1.1789E-6 8 380 6 6292
cellular component biogenesis 1.3986E-6 8 694 7 6292
gene expression 9.518E-5 8 1283 7 6292
RNA metabolic process 2.5461E-4 8 954 6 6292
regulation of translation 2.1802E-3 8 57 2 6292
nucleic acid metabolic process 2.3473E-3 8 1415 6 6292
posttranscriptional regulation of gene expression 2.4935E-3 8 61 2 6292
regulation of cellular protein metabolic process 3.0901E-3 8 68 2 6292
regulation of protein metabolic process 3.6499E-3 8 74 2 6292
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process 4.1016E-3 8 1566 6 6292
cellular macromolecule metabolic process 4.5244E-3 8 2285 7 6292
macromolecule metabolic process 5.4192E-3 8 2349 7 6292
cellular nitrogen compound metabolic process 7.9712E-3 8 1770 6 6292
nitrogen compound metabolic process 8.4927E-3 8 1791 6 6292
translation 9.4607E-3 8 376 3 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

structural constituent of ribosome 1.8631E-3 8 212 3 6292
structural molecule activity 7.087E-3 8 339 3 6292
ribonucleoprotein binding 8.8705E-3 8 7 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle