YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 6 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

non-membrane-bounded organelle 1.2371E-5 6 959 6 6292
intracellular non-membrane-bounded organelle 1.2371E-5 6 959 6 6292
cytosolic large ribosomal subunit 1.6159E-5 6 60 3 6292
cytosolic ribosome 7.7539E-5 6 101 3 6292
large ribosomal subunit 1.0009E-4 6 110 3 6292
cytosolic part 1.3633E-4 6 122 3 6292
ribosomal subunit 4.5377E-4 6 183 3 6292
ribonucleoprotein complex 5.7801E-4 6 514 4 6292
nucleolus 6.8999E-4 6 211 3 6292
cytosol 1.644E-3 6 284 3 6292
ribosome 1.747E-3 6 290 3 6292
organelle part 2.2664E-3 6 2282 6 6292
intracellular organelle part 2.2664E-3 6 2282 6 6292
nuclear lumen 6.2906E-3 6 453 3 6292
preribosome, large subunit precursor 8.5551E-3 6 9 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosome biogenesis 1.2345E-4 6 346 4 6292
ribonucleoprotein complex biogenesis 1.675E-4 6 374 4 6292
establishment of ribosome localization 2.4382E-4 6 26 2 6292
ribosome localization 2.4382E-4 6 26 2 6292
ribosomal subunit export from nucleus 2.4382E-4 6 26 2 6292
establishment of organelle localization 1.1004E-3 6 55 2 6292
ribosome assembly 1.4882E-3 6 64 2 6292
ribosomal large subunit biogenesis 1.5348E-3 6 65 2 6292
organelle assembly 1.7281E-3 6 69 2 6292
cellular component biogenesis 1.8339E-3 6 694 4 6292
organelle localization 2.6119E-3 6 85 2 6292
ribonucleoprotein complex assembly 3.0534E-3 6 92 2 6292
translation 3.6971E-3 6 376 3 6292
nuclear export 3.8138E-3 6 103 2 6292
nuclear transport 6.0179E-3 6 130 2 6292
nucleocytoplasmic transport 6.0179E-3 6 130 2 6292
ribosomal large subunit export from nucleus 8.5551E-3 6 9 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

structural constituent of ribosome 6.9964E-4 6 212 3 6292
GTPase activity 1.3526E-3 6 61 2 6292
structural molecule activity 2.7446E-3 6 339 3 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle