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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 11 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nuclear lumen 3.5105E-11 11 453 10 6292
organelle lumen 1.5115E-9 11 660 10 6292
intracellular organelle lumen 1.5115E-9 11 660 10 6292
membrane-enclosed lumen 2.7156E-9 11 700 10 6292
nuclear part 2.4537E-7 11 1103 10 6292
nucleolus 5.3209E-7 11 211 6 6292
nucleus 4.1084E-6 11 2041 11 6292
nucleoplasm 4.6994E-5 11 264 5 6292
organelle part 2.8711E-4 11 2282 10 6292
intracellular organelle part 2.8711E-4 11 2282 10 6292
nuclear outer membrane 3.7586E-4 11 86 3 6292
nuclear membrane 5.3581E-4 11 97 3 6292
non-membrane-bounded organelle 2.8626E-3 11 959 6 6292
intracellular non-membrane-bounded organelle 2.8626E-3 11 959 6 6292
outer membrane 3.1067E-3 11 178 3 6292
organelle outer membrane 3.1067E-3 11 178 3 6292
membrane-bounded organelle 3.5629E-3 11 3771 11 6292
intracellular membrane-bounded organelle 3.5629E-3 11 3771 11 6292
nuclear envelope 4.2616E-3 11 199 3 6292
nuclear membrane-endoplasmic reticulum network 6.5547E-3 11 232 3 6292
intracellular organelle 8.2563E-3 11 4070 11 6292
organelle 8.2787E-3 11 4071 11 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosome biogenesis 1.1946E-14 11 346 11 6292
ribosomal large subunit biogenesis 1.3401E-14 11 65 8 6292
ribonucleoprotein complex biogenesis 2.846E-14 11 374 11 6292
cellular component biogenesis 2.7383E-11 11 694 11 6292
ribosome assembly 3.8721E-10 11 64 6 6292
organelle assembly 6.17E-10 11 69 6 6292
ribonucleoprotein complex assembly 3.6124E-9 11 92 6 6292
cellular macromolecular complex assembly 2.2106E-7 11 182 6 6292
ribosomal large subunit assembly 4.9559E-7 11 41 4 6292
ribosomal subunit assembly 1.6483E-6 11 55 4 6292
cellular macromolecular complex subunit organization 1.7835E-6 11 259 6 6292
macromolecular complex assembly 2.8772E-6 11 281 6 6292
establishment of ribosome localization 1.0114E-5 11 26 3 6292
ribosome localization 1.0114E-5 11 26 3 6292
ribosomal subunit export from nucleus 1.0114E-5 11 26 3 6292
macromolecular complex subunit organization 1.1596E-5 11 357 6 6292
cellular component assembly 1.7936E-5 11 385 6 6292
establishment of organelle localization 9.9258E-5 11 55 3 6292
organelle localization 3.631E-4 11 85 3 6292
nuclear export 6.39E-4 11 103 3 6292
rRNA processing 1.2042E-3 11 128 3 6292
nuclear transport 1.2595E-3 11 130 3 6292
nucleocytoplasmic transport 1.2595E-3 11 130 3 6292
rRNA metabolic process 1.466E-3 11 137 3 6292
ncRNA processing 5.2979E-3 11 215 3 6292
organelle organization 6.6286E-3 11 1127 6 6292
ncRNA metabolic process 8.7081E-3 11 257 3 6292
cell proliferation 8.7135E-3 11 5 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

GTPase activity 4.8071E-3 11 61 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle