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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 12 proteins

Complex Member Proteins

Protein

GO Cellular Component GO Biological Process GO Molecular Function
KRE33
  • nucleolus
  • ribosome biogenesis
  • molecular_function
  • RPL10
  • ribonucleoprotein complex
  • cytoplasm
  • cytosolic large ribosomal subunit
  • ribosome
  • intracellular
  • ribosomal large subunit assembly
  • translation
  • structural constituent of ribosome
  • RPL15A
  • ribonucleoprotein complex
  • cytoplasm
  • cytosolic large ribosomal subunit
  • ribosome
  • intracellular
  • translation
  • RNA binding
  • structural constituent of ribosome
  • RPL20B
  • ribosome biogenesis
  • translation
  • structural constituent of ribosome
  • RPP0
  • ribosomal large subunit assembly
  • translational elongation
  • translation
  • structural constituent of ribosome
  • RPS11A, RPS11B
  • ribonucleoprotein complex
  • cytosolic small ribosomal subunit
  • cytoplasm
  • ribosome
  • 90S preribosome
  • intracellular
  • regulation of translation
  • maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
  • ribosomal small subunit assembly
  • translation
  • RNA binding
  • structural constituent of ribosome
  • rRNA binding
  • RPS1B
  • ribonucleoprotein complex
  • cytoplasm
  • cytosolic small ribosomal subunit
  • ribosome
  • 90S preribosome
  • intracellular
  • translation
  • structural constituent of ribosome
  • RPS3
  • preribosome, small subunit precursor
  • response to DNA damage stimulus
  • translation
  • structural constituent of ribosome
  • RPS6A, RPS6B
  • small-subunit processome
  • nucleus
  • ribonucleoprotein complex
  • cytoplasm
  • cytosolic small ribosomal subunit
  • ribosome
  • nucleolus
  • 90S preribosome
  • intracellular
  • maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
  • ribosome biogenesis
  • rRNA processing
  • translation
  • structural constituent of ribosome
  • RPS7A
  • small nucleolar ribonucleoprotein complex
  • translation
  • structural constituent of ribosome
  • STM1
  • cytoplasm
  • nuclear telomere cap complex
  • anti-apoptosis
  • telomere maintenance
  • DNA binding
  • telomeric DNA binding
  • UTP22
  • nucleus
  • nuclear outer membrane
  • nucleolus
  • small nucleolar ribonucleoprotein complex
  • maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
  • ribosome biogenesis
  • rRNA processing
  • snoRNA binding
  • Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    preribosome 3.4126E-7 12 34 4 6292
    ribonucleoprotein complex 6.9393E-7 12 514 8 6292
    cytosolic ribosome 6.9907E-7 12 101 5 6292
    cytosolic part 1.7937E-6 12 122 5 6292
    90S preribosome 3.5513E-6 12 17 3 6292
    ribosomal subunit 1.3223E-5 12 183 5 6292
    cytosolic small ribosomal subunit 4.3074E-5 12 38 3 6292
    non-membrane-bounded organelle 7.9037E-5 12 959 8 6292
    intracellular non-membrane-bounded organelle 7.9037E-5 12 959 8 6292
    cytosol 1.1027E-4 12 284 5 6292
    ribosome 1.2181E-4 12 290 5 6292
    small ribosomal subunit 3.0582E-4 12 73 3 6292
    macromolecular complex 5.2917E-4 12 1635 9 6292
    cytosolic large ribosomal subunit 5.5506E-3 12 60 2 6292
    nucleolus 6.5368E-3 12 211 3 6292
    small nucleolar ribonucleoprotein complex 7.9142E-3 12 72 2 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    translation 1.6606E-9 12 376 9 6292
    ribosome biogenesis 8.9294E-7 12 346 7 6292
    maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 1.5001E-6 12 13 3 6292
    ribonucleoprotein complex biogenesis 1.5153E-6 12 374 7 6292
    gene expression 5.3098E-6 12 1283 10 6292
    cellular protein metabolic process 1.6032E-5 12 1074 9 6292
    protein metabolic process 2.5792E-5 12 1136 9 6292
    cellular macromolecule biosynthetic process 3.7358E-5 12 1187 9 6292
    macromolecule biosynthetic process 3.7891E-5 12 1189 9 6292
    cellular component biogenesis 9.277E-5 12 694 7 6292
    cellular macromolecule metabolic process 1.144E-4 12 2285 11 6292
    ribosomal subunit assembly 1.3153E-4 12 55 3 6292
    macromolecule metabolic process 1.5296E-4 12 2349 11 6292
    maturation of SSU-rRNA 1.6228E-4 12 59 3 6292
    ribosome assembly 2.0686E-4 12 64 3 6292
    organelle assembly 2.5874E-4 12 69 3 6292
    cellular biosynthetic process 3.745E-4 12 1567 9 6292
    biosynthetic process 4.4838E-4 12 1602 9 6292
    ribonucleoprotein complex assembly 6.0496E-4 12 92 3 6292
    primary metabolic process 1.3504E-3 12 2896 11 6292
    rRNA processing 1.5818E-3 12 128 3 6292
    negative regulation of programmed cell death 1.9072E-3 12 1 1 6292
    anti-apoptosis 1.9072E-3 12 1 1 6292
    negative regulation of cell death 1.9072E-3 12 1 1 6292
    negative regulation of apoptosis 1.9072E-3 12 1 1 6292
    rRNA metabolic process 1.9237E-3 12 137 3 6292
    cellular metabolic process 2.1697E-3 12 3033 11 6292
    ribosomal large subunit assembly 2.6238E-3 12 41 2 6292
    metabolic process 3.2647E-3 12 3157 11 6292
    cellular macromolecular complex assembly 4.3192E-3 12 182 3 6292
    ribosomal large subunit biogenesis 6.4883E-3 12 65 2 6292
    ncRNA processing 6.8876E-3 12 215 3 6292
    regulation of programmed cell death 7.6087E-3 12 4 1 6292
    regulation of apoptosis 7.6087E-3 12 4 1 6292
    regulation of cell death 7.6087E-3 12 4 1 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    P-value

    A

    B

    I

    T

    structural constituent of ribosome 9.542E-12 12 212 9 6292
    structural molecule activity 6.577E-10 12 339 9 6292

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle