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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 7 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

cytosolic ribosome 2.1103E-6 7 101 4 6292
cytosolic part 4.503E-6 7 122 4 6292
ribosomal subunit 2.2637E-5 7 183 4 6292
ribonucleoprotein complex 6.5267E-5 7 514 5 6292
cytosol 1.277E-4 7 284 4 6292
ribosome 1.3857E-4 7 290 4 6292
90S preribosome 1.4316E-4 7 17 2 6292
preribosome 5.8524E-4 7 34 2 6292
cytosolic small ribosomal subunit 7.3181E-4 7 38 2 6292
non-membrane-bounded organelle 1.3072E-3 7 959 5 6292
intracellular non-membrane-bounded organelle 1.3072E-3 7 959 5 6292
cytosolic large ribosomal subunit 1.8211E-3 7 60 2 6292
small ribosomal subunit 2.6853E-3 7 73 2 6292
large ribosomal subunit 6.0062E-3 7 110 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

translation 2.915E-7 7 376 6 6292
gene expression 1.4468E-5 7 1283 7 6292
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 8.2282E-5 7 13 2 6292
cellular protein metabolic process 1.4622E-4 7 1074 6 6292
protein metabolic process 2.0289E-4 7 1136 6 6292
cellular macromolecule biosynthetic process 2.6203E-4 7 1187 6 6292
macromolecule biosynthetic process 2.6461E-4 7 1189 6 6292
ribosome biogenesis 2.7556E-4 7 346 4 6292
ribonucleoprotein complex biogenesis 3.725E-4 7 374 4 6292
cellular macromolecule metabolic process 8.282E-4 7 2285 7 6292
macromolecule metabolic process 1.0051E-3 7 2349 7 6292
cellular biosynthetic process 1.3053E-3 7 1567 6 6292
biosynthetic process 1.4816E-3 7 1602 6 6292
ribosomal subunit assembly 1.532E-3 7 55 2 6292
maturation of SSU-rRNA 1.7614E-3 7 59 2 6292
ribosome assembly 2.0698E-3 7 64 2 6292
organelle assembly 2.4022E-3 7 69 2 6292
cellular component biogenesis 3.9065E-3 7 694 4 6292
ribonucleoprotein complex assembly 4.2342E-3 7 92 2 6292
primary metabolic process 4.3588E-3 7 2896 7 6292
cellular metabolic process 6.026E-3 7 3033 7 6292
metabolic process 7.9792E-3 7 3157 7 6292
rRNA processing 8.0653E-3 7 128 2 6292
rRNA metabolic process 9.1999E-3 7 137 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

structural constituent of ribosome 9.2906E-9 7 212 6 6292
structural molecule activity 1.5671E-7 7 339 6 6292
RNA binding 5.7756E-3 7 367 3 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle