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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 7 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

cytosolic ribosome 2.1103E-6 7 101 4 6292
cytosolic part 4.503E-6 7 122 4 6292
ribosomal subunit 2.2637E-5 7 183 4 6292
ribonucleoprotein complex 6.5267E-5 7 514 5 6292
non-membrane-bounded organelle 7.5345E-5 7 959 6 6292
intracellular non-membrane-bounded organelle 7.5345E-5 7 959 6 6292
cytosol 1.277E-4 7 284 4 6292
ribosome 1.3857E-4 7 290 4 6292
90S preribosome 1.4316E-4 7 17 2 6292
preribosome 5.8524E-4 7 34 2 6292
cytosolic small ribosomal subunit 7.3181E-4 7 38 2 6292
cytosolic large ribosomal subunit 1.8211E-3 7 60 2 6292
small ribosomal subunit 2.6853E-3 7 73 2 6292
nuclear outer membrane 3.7089E-3 7 86 2 6292
nuclear membrane 4.6971E-3 7 97 2 6292
large ribosomal subunit 6.0062E-3 7 110 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosome biogenesis 1.7714E-7 7 346 6 6292
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) 2.4008E-7 7 13 3 6292
ribonucleoprotein complex biogenesis 2.8234E-7 7 374 6 6292
cellular component biogenesis 1.1204E-5 7 694 6 6292
translation 1.411E-5 7 376 5 6292
ribosomal subunit assembly 2.1584E-5 7 55 3 6292
maturation of SSU-rRNA 2.6695E-5 7 59 3 6292
ribosome assembly 3.4131E-5 7 64 3 6292
organelle assembly 4.2818E-5 7 69 3 6292
ribonucleoprotein complex assembly 1.015E-4 7 92 3 6292
rRNA processing 2.7117E-4 7 128 3 6292
rRNA metabolic process 3.3156E-4 7 137 3 6292
gene expression 4.1171E-4 7 1283 6 6292
cellular macromolecular complex assembly 7.6476E-4 7 182 3 6292
ribosomal large subunit assembly 8.5225E-4 7 41 2 6292
ncRNA processing 1.2438E-3 7 215 3 6292
regulation of translation 1.6447E-3 7 57 2 6292
posttranscriptional regulation of gene expression 1.8819E-3 7 61 2 6292
ncRNA metabolic process 2.0862E-3 7 257 3 6292
cellular macromolecular complex subunit organization 2.1334E-3 7 259 3 6292
ribosomal large subunit biogenesis 2.1344E-3 7 65 2 6292
cellular protein metabolic process 2.2261E-3 7 1074 5 6292
regulation of cellular protein metabolic process 2.3339E-3 7 68 2 6292
macromolecular complex assembly 2.6978E-3 7 281 3 6292
regulation of protein metabolic process 2.7584E-3 7 74 2 6292
protein metabolic process 2.8929E-3 7 1136 5 6292
cellular macromolecule biosynthetic process 3.5479E-3 7 1187 5 6292
macromolecule biosynthetic process 3.5757E-3 7 1189 5 6292
macromolecular complex subunit organization 5.3413E-3 7 357 3 6292
RNA processing 6.3721E-3 7 380 3 6292
cellular component assembly 6.6113E-3 7 385 3 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

structural constituent of ribosome 8.2387E-7 7 212 5 6292
structural molecule activity 8.4682E-6 7 339 5 6292
RNA binding 3.4624E-4 7 367 4 6292
nucleic acid binding 3.3506E-3 7 666 4 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle