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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 4 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

90S preribosome 4.1099E-5 4 17 2 6292
preribosome 1.6892E-4 4 34 2 6292
non-membrane-bounded organelle 5.368E-4 4 959 4 6292
intracellular non-membrane-bounded organelle 5.368E-4 4 959 4 6292
Noc1p-Noc2p complex 1.2712E-3 4 2 1 6292
Noc complex 3.1756E-3 4 5 1 6292
preribosome, large subunit precursor 5.7106E-3 4 9 1 6292
nucleolus 6.4227E-3 4 211 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ribosome biogenesis 6.3273E-4 4 346 3 6292
regulation of histone methylation 6.3573E-4 4 1 1 6292
negative regulation of histone methylation 6.3573E-4 4 1 1 6292
negative regulation of histone modification 6.3573E-4 4 1 1 6292
regulation of histone modification 6.3573E-4 4 1 1 6292
negative regulation of histone H3-K36 methylation 6.3573E-4 4 1 1 6292
regulation of histone H3-K36 methylation 6.3573E-4 4 1 1 6292
protein peptidyl-prolyl isomerization 6.3573E-4 4 1 1 6292
histone peptidyl-prolyl isomerization 6.3573E-4 4 1 1 6292
histone H3-K36 methylation 6.3573E-4 4 1 1 6292
regulation of cellular protein metabolic process 6.8098E-4 4 68 2 6292
ribonucleoprotein complex biogenesis 7.9684E-4 4 374 3 6292
regulation of protein metabolic process 8.0639E-4 4 74 2 6292
histone lysine methylation 1.2712E-3 4 2 1 6292
regulation of chromosome organization 1.2712E-3 4 2 1 6292
regulation of gene expression 1.3321E-3 4 445 3 6292
regulation of macromolecule biosynthetic process 1.4316E-3 4 456 3 6292
regulation of cellular biosynthetic process 1.5848E-3 4 472 3 6292
regulation of biosynthetic process 1.5947E-3 4 473 3 6292
regulation of macromolecule metabolic process 1.7483E-3 4 488 3 6292
regulation of primary metabolic process 2.0368E-3 4 514 3 6292
regulation of cellular metabolic process 2.3038E-3 4 536 3 6292
regulation of metabolic process 2.4454E-3 4 547 3 6292
negative regulation of protein modification process 2.5411E-3 4 4 1 6292
regulation of transcription, mating-type specific 3.1756E-3 4 5 1 6292
regulation of protein modification process 4.4437E-3 4 7 1 6292
cellular macromolecular complex assembly 4.8049E-3 4 182 2 6292
cellular component biogenesis 4.9063E-3 4 694 3 6292
regulation of cellular process 7.309E-3 4 796 3 6292
regulation of biological process 8.0789E-3 4 824 3 6292
negative regulation of cellular protein metabolic process 9.5041E-3 4 15 1 6292
cellular macromolecular complex subunit organization 9.5855E-3 4 259 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

cis-trans isomerase activity 8.8726E-3 4 14 1 6292
peptidyl-prolyl cis-trans isomerase activity 8.8726E-3 4 14 1 6292
histone binding 8.8726E-3 4 14 1 6292
specific transcriptional repressor activity 9.5041E-3 4 15 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle