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View Protein Complex Details

Complex Overview

From Publication: Riffle <i>et al</i>. (2010) (Unpublished Data)
Notes: Complex predicted from the combined set of Gavin (2002), Gavin (2006), Ho (2002) and Krogan (2006); at p-value cutoff of 1E-7
Complex Size: 6 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

non-membrane-bounded organelle 1.2371E-5 6 959 6 6292
intracellular non-membrane-bounded organelle 1.2371E-5 6 959 6 6292
nucleolus 1.7494E-5 6 211 4 6292
90S preribosome 1.0242E-4 6 17 2 6292
nuclear lumen 3.5395E-4 6 453 4 6292
preribosome 4.1945E-4 6 34 2 6292
cytosolic small ribosomal subunit 5.2472E-4 6 38 2 6292
ribonucleoprotein complex 5.7801E-4 6 514 4 6292
organelle lumen 1.5136E-3 6 660 4 6292
intracellular organelle lumen 1.5136E-3 6 660 4 6292
small nucleolar ribonucleoprotein complex 1.8804E-3 6 72 2 6292
membrane-enclosed lumen 1.8952E-3 6 700 4 6292
small ribosomal subunit 1.9326E-3 6 73 2 6292
organelle part 2.2664E-3 6 2282 6 6292
intracellular organelle part 2.2664E-3 6 2282 6 6292
cytosolic ribosome 3.6696E-3 6 101 2 6292
cytosolic part 5.3155E-3 6 122 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

rRNA processing 2.3759E-6 6 128 4 6292
ribosome biogenesis 2.8028E-6 6 346 5 6292
rRNA metabolic process 3.1205E-6 6 137 4 6292
ribonucleoprotein complex biogenesis 4.1287E-6 6 374 5 6292
ncRNA processing 1.8849E-5 6 215 4 6292
ncRNA metabolic process 3.8238E-5 6 257 4 6292
cellular component biogenesis 8.7868E-5 6 694 5 6292
RNA processing 1.7827E-4 6 380 4 6292
regulation of translation 1.1817E-3 6 57 2 6292
maturation of SSU-rRNA 1.2657E-3 6 59 2 6292
posttranscriptional regulation of gene expression 1.3526E-3 6 61 2 6292
regulation of cellular protein metabolic process 1.6787E-3 6 68 2 6292
gene expression 1.746E-3 6 1283 5 6292
regulation of protein metabolic process 1.9854E-3 6 74 2 6292
RNA metabolic process 6.0989E-3 6 954 4 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

rRNA binding 9.041E-5 6 16 2 6292
ribonucleoprotein binding 6.6592E-3 6 7 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle