From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.054] [SVM Score: 0.598276326806] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
RAD18 |
|
|
|
RRM3 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
nuclear chromatin | 1.3278E-4 | 2 | 73 | 2 | 6292 |
chromatin | 1.4784E-4 | 2 | 77 | 2 | 6292 |
nuclear chromosome part | 9.0721E-4 | 2 | 190 | 2 | 6292 |
nuclear chromosome | 1.3075E-3 | 2 | 228 | 2 | 6292 |
chromosomal part | 1.413E-3 | 2 | 237 | 2 | 6292 |
chromosome | 1.8898E-3 | 2 | 274 | 2 | 6292 |
nuclear telomeric heterochromatin | 2.224E-3 | 2 | 7 | 1 | 6292 |
telomeric heterochromatin | 2.224E-3 | 2 | 7 | 1 | 6292 |
nuclear heterochromatin | 2.224E-3 | 2 | 7 | 1 | 6292 |
heterochromatin | 2.224E-3 | 2 | 7 | 1 | 6292 |
nuclear chromosome, telomeric region | 7.2981E-3 | 2 | 23 | 1 | 6292 |
chromosome, telomeric region | 8.5646E-3 | 2 | 27 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
postreplication repair | 5.7138E-3 | 2 | 18 | 1 | 6292 |
DNA metabolic process | 8.631E-3 | 2 | 585 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
DNA-dependent ATPase activity | 7.5032E-5 | 2 | 55 | 2 | 6292 |
ATPase activity, coupled | 5.5711E-4 | 2 | 149 | 2 | 6292 |
ATPase activity | 1.1194E-3 | 2 | 211 | 2 | 6292 |
nucleoside-triphosphatase activity | 2.7262E-3 | 2 | 329 | 2 | 6292 |
hydrolase activity, acting on acid anhydrides | 3.1391E-3 | 2 | 353 | 2 | 6292 |
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 3.1391E-3 | 2 | 353 | 2 | 6292 |
pyrophosphatase activity | 3.1391E-3 | 2 | 353 | 2 | 6292 |
single-stranded DNA binding | 5.0798E-3 | 2 | 16 | 1 | 6292 |
ATP-dependent DNA helicase activity | 5.7138E-3 | 2 | 18 | 1 | 6292 |