| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.037] [SVM Score: 0.602111584537] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| condensed nuclear chromosome kinetochore | 5.9419E-5 | 2 | 49 | 2 | 6292 |
| condensed chromosome kinetochore | 5.9419E-5 | 2 | 49 | 2 | 6292 |
| condensed chromosome, centromeric region | 7.5032E-5 | 2 | 55 | 2 | 6292 |
| condensed nuclear chromosome, centromeric region | 7.5032E-5 | 2 | 55 | 2 | 6292 |
| kinetochore | 8.9432E-5 | 2 | 60 | 2 | 6292 |
| chromosome, centromeric region | 1.1171E-4 | 2 | 67 | 2 | 6292 |
| condensed nuclear chromosome | 1.8468E-4 | 2 | 86 | 2 | 6292 |
| condensed chromosome | 2.2085E-4 | 2 | 94 | 2 | 6292 |
| nuclear chromosome part | 9.0721E-4 | 2 | 190 | 2 | 6292 |
| Ndc80 complex | 1.2712E-3 | 2 | 4 | 1 | 6292 |
| nuclear chromosome | 1.3075E-3 | 2 | 228 | 2 | 6292 |
| chromosomal part | 1.413E-3 | 2 | 237 | 2 | 6292 |
| chromosome | 1.8898E-3 | 2 | 274 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| protein serine/threonine/tyrosine kinase activity | 2.224E-3 | 2 | 7 | 1 | 6292 |