From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.054] [SVM Score: 0.611187613489] |
Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
condensed chromosome, centromeric region | 7.5032E-5 | 2 | 55 | 2 | 6292 |
condensed nuclear chromosome, centromeric region | 7.5032E-5 | 2 | 55 | 2 | 6292 |
chromosome, centromeric region | 1.1171E-4 | 2 | 67 | 2 | 6292 |
condensed nuclear chromosome | 1.8468E-4 | 2 | 86 | 2 | 6292 |
condensed chromosome | 2.2085E-4 | 2 | 94 | 2 | 6292 |
nuclear chromosome part | 9.0721E-4 | 2 | 190 | 2 | 6292 |
nuclear chromosome | 1.3075E-3 | 2 | 228 | 2 | 6292 |
chromosomal part | 1.413E-3 | 2 | 237 | 2 | 6292 |
chromosome | 1.8898E-3 | 2 | 274 | 2 | 6292 |
protein phosphatase type 2A complex | 1.9064E-3 | 2 | 6 | 1 | 6292 |
DASH complex | 3.811E-3 | 2 | 12 | 1 | 6292 |
protein serine/threonine phosphatase complex | 5.3968E-3 | 2 | 17 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
protein serine/threonine phosphatase activity | 8.248E-3 | 2 | 26 | 1 | 6292 |