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Protein Overview: H33_DANRE

General Information:
Name(s) found: H33_DANRE [Swiss-Prot]
Description(s) found:
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  • gi|82237785|sp|Q6PI20.3|H33_DANRE RecName: Full=Histone H3.3 [NCBI NR]
  • gi|68404536|ref|XP_697865.1| PREDICTED: similar to H3 histone, family 3B [Danio rerio] [NCBI NR]
  • gi|68404500|ref|XP_696632.1| PREDICTED: similar to H3 histone, family 3B [Danio rerio] [NCBI NR]
  • gi|68360896|ref|XP_698047.1| PREDICTED: similar to H3 histone, family 3B [Danio rerio] [NCBI NR]
  • gi|62955167|ref|NP_001017599.1| H3 histone, family 3-like [Danio rerio] [NCBI NR]
  • gi|62202237|gb|AAH92854.1| Zgc:110292 [Danio rerio] [NCBI NR]
  • gi|48734917|gb|AAH71406.1| H3 histone, family 3A [Danio rerio] [NCBI NR]
  • gi|41055417|ref|NP_957395.1| H3 histone, family 3-like [Danio rerio] [NCBI NR]
  • gi|41053381|ref|NP_956297.1| H3 histone, family 3C [Danio rerio] [NCBI NR]
  • gi|34783839|gb|AAH57444.1| H3 histone, family 3C [Danio rerio] [NCBI NR]
  • gi|29124583|gb|AAH49017.1| Zgc:56418 [Danio rerio] [NCBI NR]
  • gi|182889676|gb|AAI65500.1| H3f3c protein [Danio rerio] [NCBI NR]
  • gi|158253878|gb|AAI54270.1| Zgc:56418 protein [Danio rerio] [NCBI NR]
  • gi|156229982|gb|AAI52135.1| Zgc:64222 protein [Danio rerio] [NCBI NR]
  • gi|148753375|gb|AAI42798.1| Zgc:64222 protein [Danio rerio] [NCBI NR]
  • Histone H3.3 OS=Danio rerio GN=h3f3a PE=2 SV=3 [Swiss-Prot]
  • Histone H3.3 - Brachydanio rerio (Zebrafish) (Danio rerio) [Swiss-Prot]
  • similar to Histone H3.3B [071204_hmrz_cont.fasta]
  • Unknown (protein for MGC:64222); wu:fj58b09 [071204_hmrz_cont.fasta]
  • MGC52708 protein [Xenopus laevis]gi|27503244|gb|AAH42290.1| H3f3b-prov protein [Xenopus laevis]gi|38047789|gb|AAR09797.1| similar to Drosophila melanogaster His3.3A [Drosophila yakuba]gi|27679386|ref|XP_213961.1| similar to H3 histone, family 3B [Rattu [nrdb_11152004_Chlamydomonas]
  • Histone H3.3 [nr-271106-contam.fasta]
  • PREDICTED: similar to H3 histone, family 3B [Danio rerio] [nr-271106-contam.fasta]
  • Zgc:56418 [Danio rerio] [nr-271106-contam.fasta]
  • Zgc:64222 [Danio rerio] [nr-271106-contam.fasta]
  • hypothetical protein LOC336231 [Danio rerio] [nr-271106-contam.fasta]
  • Zgc:110292 [Danio rerio] [nr-271106-contam.fasta]
  • H3 histone, family 3A [Danio rerio] [nr-271106-contam.fasta]
  • hypothetical protein LOC550262 [Danio rerio] [nr-271106-contam.fasta]
  • zgc:56418 [Danio rerio] [nr-271106-contam.fasta]
  • histone H3.3 [Danio rerio] [NCBI-RefSeq_Human_na_04-23-2010_reversed.fasta]
  • H3 histone, family 3C [Danio rerio] [NCBI-RefSeq_Human_na_04-23-2010_reversed.fasta]
  • H3 histone, family 3-like [Danio rerio] [NCBI-RefSeq_Human_na_04-23-2010_reversed.fasta]
  • PREDICTED: histone H3.3B-like isoform 1 [Danio rerio] [NCBI-RefSeq_D_rerio_na_08-30-2010_reversed.fasta]
  • PREDICTED: histone H3.3B-like isoform 2 [Danio rerio] [NCBI-RefSeq_D_rerio_na_08-30-2010_reversed.fasta]
  • PREDICTED: histone H3.3B-like [Danio rerio] [NCBI-RefSeq_D_rerio_na_08-30-2010_reversed.fasta]
  • H3 histone, family 3D [Danio rerio] [NCBI-RefSeq_D_rerio_na_08-30-2010_reversed.fasta]
  • similar to Histone H3.3B [Danio rerio] [H3-CATD_Contrast.fasta]
  • Unknown (protein for MGC:64222); wu:fj58b09 [Danio rerio] [H3-CATD_Contrast.fasta]
  • RecName: Full=Histone H3.3 [NCBI_RefSeq_D_rerio_20120531_05-31-2012_reversed.fasta]
  • Isoform of Q6PI20, Histone H3 OS=Danio rerio GN=h3f3b.1 PE=1 SV=1 [DANRE.fasta.20160308]
    • Organism: Danio rerio
    Length: 136 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    chromosome [IEA]
    nucleosome [IEA]
    Biological Process: nucleosome assembly [IEA]
    Molecular Function: DNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARTKQTARK STGGKAPRKQ LATKAARKSA PSTGGVKKPH RYRPGTVALR EIRRYQKSTE  60
   61 LLIRKLPFQR LVREIAQDFK TDLRFQSAAI GALQEASEAY LVGLFEDTNL CAIHAKRVTI 120
  121 MPKDIQLARR IRGERA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..136] PSI-BLAST 57.69897 Crystal structure of the nucleosome core particle containing the histone domain of macroH2A


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle