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Protein Overview: CPSF5_RAT

General Information:
Name(s) found: CPSF5_RAT [Swiss-Prot]
Description(s) found:
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  • gi|88911281|sp|Q4KM65.1|CPSF5_RAT RecName: Full=Cleavage and polyadenylation specificity factor subunit 5; AltName: Full=Nucleoside diphosphate-linked moiety X motif 21; Short=Nudix motif 21 [NCBI NR]
  • gi|84781636|ref|NP_001034093.1| cleavage and polyadenylation specific factor 5 [Rattus norvegicus] [NCBI NR]
  • gi|68534752|gb|AAH98748.1| Cleavage and polyadenylation specific factor 5 [Rattus norvegicus] [NCBI NR]
  • ref|XP_214640.1| similar to cleavage and polyadenylation specific factor 5; cleavage and polyadenylation specific factor 5, 25 kD subunit [Rattus norvegicus] [NCBI NR]
  • gi|195539864|gb|AAI68149.1| Cleavage and polyadenylation specific factor 5 [Rattus norvegicus] [NCBI NR]
  • gi|149032465|gb|EDL87356.1| rCG39081 [Rattus norvegicus] [NCBI NR]
  • Cleavage and polyadenylation specificity factor subunit 5 OS=Rattus norvegicus GN=Nudt21 PE=2 SV=1 [Swiss-Prot]
  • similar to cleavage and polyadenylation specific factor 5; cleavage and polyadenylation specific factor 5, 25 kD subunit [HMR_022704-rand.fasta]
  • similar to cleavage and polyadenylation specific factor 5; cleavage and polyadenylation specific factor 5, 25 kD subunit [Rattus norvegicus]gi|13386106|ref|NP_080899.1| cleavage and polyadenylation specific factor 5 [Mus musculus]gi|53733680|gb|AAH84013 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=10116 Cleavage and polyadenylation specificity factor 5 [EBI-IPI_rat_3.17_05-10-2006_con_reversed.fasta]
  • Tax_Id=10116 Cpsf5_predicted protein [EBI-IPI_rat_3.13_12-01-2005_con_reversed.fasta]
  • Tax_Id=10116 26 kDa protein [EBI-IPI_rat_3.08_07-12-2005_origrev_con.fasta]
  • Tax_Id=10116 Similar to cleavage and polyadenylation Specific factor 5 [EBI-IPI_rat_3.05_04-04-2005_origrev.fasta]
  • Cleavage and polyadenylation specificity factor subunit 5 (Nucleoside diphosphate-linked moiety X motif 21) (Nudix motif 21) [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • cleavage and polyadenylation specific factor 5 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • rCG39081 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Cleavage and polyadenylation specific factor 5 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Tax_Id=10116 SIMILAR TO CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 5 [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta]
  • Cleavage and polyadenylation specificity factor 5 (Nucleoside diphosphate-linked moiety X motif 21) (Nudix motif 21) [nr-271106-contam.fasta]
  • Tax_Id=10116 Gene_Symbol=Cpsf5 Cleavage and polyadenylation specificity factor subunit 5 [rat-ipi-250309-contam.fasta]
  • Cleavage and polyadenylation specificity factor subunit 5 OS=Rattus norvegicus GN=Nudt21 [011711_HMR.fasta]
  • Cleavage and polyadenylation specific factor 5 OS=Rattus norvegicus GN=Nudt21 [011711_HMR.fasta]
  • Cleavage and polyadenylation specific factor 5 OS=Rattus norvegicus GN=Nudt21 PE=2 SV=1 [UNIPROT_RAT_07-21-2011_reversed.fasta]
  • Isoform of Q4KM65, Cleavage and polyadenylation specific factor 5 OS=Rattus norvegicus GN=Nudt21 PE=1 SV=1 [RAT.fasta.20160308]
    • Organism: Rattus norvegicus
    Length: 227 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    centrosome [UNKNOWN][IEA]
    paraspeckles [UNKNOWN][ISS]
    Biological Process: RNA splicing [UNKNOWN]
    mRNA processing [UNKNOWN][ISS]
    Molecular Function: RNA binding [UNKNOWN][IEA]
    protein binding [UNKNOWN][IEA]
    histone deacetylase binding [UNKNOWN][IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVVPPNRSQ TGWPRGVNQF GNKYIQQTKP LTLERTINLY PLTNYTFGTK EPLYEKDSSV  60
   61 AARFQRMREE FDKIGMRRTV EGVLIVHEHR LPHVLLLQLG TTFFKLPGGE LNPGEDEVEG 120
  121 LKRLMTEILG RQDGVLQDWV IDDCIGNWWR PNFEPPQYPY IPAHITKPKE HKKLFLVQLQ 180
  181 EKALFAVPKN YKLVAAPLFE LYDNAPGYGP IISSLPQLLS RFNFIYN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..227] PSI-BLAST 108.0 No description for 2cl3A was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle