YRC Public Data Repository - Protein Structure Prediction

Protein:	CPSF5_RAT
Organism:	Rattus norvegicus
Length:	227 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CPSF5_RAT.

Description	E-value	Query Range	Subject Range
CPSF5_PONPY - Cleavage and polyadenylation specificity factor subunit 5 - Pongo pygmaeus (Orangutan) NUDT21 - nudix (nucleoside diphosphate linked moiety X)-type motif 21 gi\|114662616 - gi\|114662616\|ref\|XP_510978.2\| PREDICTED: cleavage and polyadenylation specific factor 5 [Pan troglod... CPSF5_PONAB - Cleavage and polyadenylation specificity factor subunit 5 OS=Pongo abelii GN=NUDT21 PE=2 SV=1 gi\|123982654, gi... - gi\|123997321\|gb\|ABM86262.1\| nudix (nucleoside diphosphate linked moiety X)-type motif 21 [synthetic ... gi\|90079113 - gi\|90079113\|dbj\|BAE89236.1\| unnamed protein product [Macaca fascicularis] CCDS10760.1_1 - null CPSF5_BOVIN - Cleavage and polyadenylation specificity factor subunit 5 OS=Bos taurus GN=NUDT21 PE=2 SV=1 ENSCJAT00000024679 - null	419.0	[0..1]	[227..1]
gi\|61371857 - gi\|61371857\|gb\|AAX43744.1\| cleavage and polyadenylation specific factor 5 [synthetic construct]	419.0	[0..1]	[227..1]
gi\|74138675 - gi\|74138675\|dbj\|BAE27154.1\| unnamed protein product [Mus musculus]	418.0	[0..1]	[227..1]
gi\|165971084, gi... - gi\|89267892\|emb\|CAJ83328.1\| cleavage and polyadenylation specific factor 5 [Xenopus tropicalis], gi\|...	418.0	[0..1]	[227..1]
CPSF5_XENLA - Cleavage and polyadenylation specificity factor subunit 5 OS=Xenopus laevis GN=cpsf5 PE=2 SV=1	417.0	[0..1]	[227..1]
CPSF5_DANRE - Cleavage and polyadenylation specificity factor subunit 5 OS=Danio rerio GN=cpsf5 PE=2 SV=1	413.0	[0..1]	[227..1]
gi\|47230369 - gi\|47230369\|emb\|CAF99562.1\| unnamed protein product [Tetraodon nigroviridis]	402.0	[0..1]	[227..1]
gi\|116132312, gi... - gi\|118778290\|ref\|XP_308558.3\| AGAP007242-PA [Anopheles gambiae str. PEST], gi\|116132312\|gb\|EAA04203.... AGAP007242-PA - cleavage and polyadenylation specificity factor subunit 5\|protein_coding\|2L:44512338:44515161:-1\|gen...	391.0	[0..1]	[226..1]

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Predicted Domain #1

Region A:
Residues: [1-227]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVVPPNRSQ TGWPRGVNQF GNKYIQQTKP LTLERTINLY PLTNYTFGTK EPLYEKDSSV  60
   61 AARFQRMREE FDKIGMRRTV EGVLIVHEHR LPHVLLLQLG TTFFKLPGGE LNPGEDEVEG 120
  121 LKRLMTEILG RQDGVLQDWV IDDCIGNWWR PNFEPPQYPY IPAHITKPKE HKKLFLVQLQ 180
  181 EKALFAVPKN YKLVAAPLFE LYDNAPGYGP IISSLPQLLS RFNFIYN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	108.0
Match:	2cl3A
Description:	No description for 2cl3A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits