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Protein Overview: gi|149031722, gi...

General Information:
Name(s) found: gi|34877889 [NCBI NR]
gi|187469818 [NCBI NR]
gi|157818069 [NCBI NR]
gi|149031722 [NCBI NR]
gi|109506897 [NCBI NR]
Description(s) found:
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  • gi|34877889|ref|XP_214621.2| PREDICTED: similar to Small nuclear ribonucleoprotein Sm D1 (snRNP core protein D1) (Sm-D1) (Sm-D autoantigen) [Rattus norvegicus] [NCBI NR]
  • gi|187469818|gb|AAI67095.1| Small nuclear ribonucleoprotein D1 [Rattus norvegicus] [NCBI NR]
  • gi|157818069|ref|NP_001099633.1| small nuclear ribonucleoprotein D1 [Rattus norvegicus] [NCBI NR]
  • gi|149031722|gb|EDL86672.1| small nuclear ribonucleoprotein D1 (predicted) [Rattus norvegicus] [NCBI NR]
  • gi|109506897|ref|XP_001060646.1| PREDICTED: similar to Small nuclear ribonucleoprotein Sm D1 (snRNP core protein D1) (Sm-D1) (Sm-D autoantigen) [Rattus norvegicus] [NCBI NR]
  • similar to Small nuclear ribonucleoprotein Sm D1 (snRNP core protein D1) (Sm-D1) (Sm-D autoantigen) [HMR_022704-rand.fasta]
  • similar to Small nuclear ribonucleoprotein Sm D1 (snRNP core protein D1) (Sm-D1) (Sm-D autoantigen) [Rattus norvegicus]gi|5902102|ref|NP_008869.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Homo sapiens]gi|6678055|ref|NP_033252.1| small nucle [nrdb_11152004_Chlamydomonas]
  • Tax_Id=10116 PREDICTED: similar to small nuclear ribonucleoprotein D1 [EBI-IPI_rat_3.17_05-10-2006_con_reversed.fasta]
  • Tax_Id=10116 Similar to Small nuclear ribonucleoprotein Sm D1 (SnRNP core protein D1) (Sm-D1) (Sm-D autoantigen) [EBI-IPI_rat_3.05_04-04-2005_origrev.fasta]
  • small nuclear ribonucleoprotein D1 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Small nuclear ribonucleoprotein D1 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • small nuclear ribonucleoprotein D1 (predicted) [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Tax_Id=10116 SIMILAR TO SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1 (SNRNP CORE PROTEIN D1) (SM-D1) (SM-D AUTOANTIGEN) [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta]
  • PREDICTED: similar to Small nuclear ribonucleoprotein Sm D1 (snRNP core protein D1) (Sm-D1) (Sm-D autoantigen) [Rattus norvegicus] [nr-271106-contam.fasta]
  • Tax_Id=10116 Gene_Symbol=Snrpd1 Small nuclear ribonucleoprotein D1 [rat-ipi-250309-contam.fasta]
  • Small nuclear ribonucleoprotein D1 OS=Rattus norvegicus GN=Snrpd1 [011711_HMR.fasta]
  • Small nuclear ribonucleoprotein D1 OS=Rattus norvegicus GN=Snrpd1 PE=4 SV=1 [UNIPROT_RAT_07-21-2011_reversed.fasta]
  • Protein Snrpd1 OS=Rattus norvegicus GN=Snrpd1 PE=4 SV=1 [Aridor_1205.fasta]
  • Protein Snrpd1 OS=Rattus norvegicus GN=Snrpd1 PE=2 SV=1 [20141208_RAT.fasta]
  • Protein Snrpd1 OS=Rattus norvegicus GN=Snrpd1 PE=1 SV=1 [RAT.fasta.20160308]
    • Organism: Rattus norvegicus
    Length: 119 amino acids

    Gene Ontology:
    Cellular Component: nucleus [UNKNOWN][IEA]
    ribonucleoprotein complex [IEA]
    cytoplasm [UNKNOWN][IEA]
    cytosol [UNKNOWN]
    nucleoplasm [UNKNOWN]
    Biological Process: RNA splicing [UNKNOWN]
    spliceosomal snRNP assembly [UNKNOWN]
    Molecular Function: nucleic acid binding [IEA]
    protein binding [UNKNOWN][IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLVRFLMKL SHETVTIELK NGTQVHGTIT GVDVSMNTHL KAVKMTLKNR EPVQLETLSI  60
   61 RGNNIRYFIL PDSLPLDTLL VDVEPKVKSK KREAVAGRGR GRGRGRGRGR GRGRGGPRR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..119] PSI-BLAST 26.154902 D1 core SNRNP protein


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle