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Protein Overview: Obp50d-PA

General Information:
Name(s) found: Obp50d-PA / FBpp0086682 [FlyBase]
Description(s) found:
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  • gi|45551098|ref|NP_725388.2| Odorant-binding protein 50d [Drosophila melanogaster] [NCBI NR]
  • gi|45445554|gb|AAM71005.2| Odorant-binding protein 50d [Drosophila melanogaster] [NCBI NR]
  • The gene Odorant-binding protein 50d is referred to in FlyBase by the symbol Dmel\Obp50d (CG30074, FBgn0050074). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:10260629..10261264. It has the cytological map location 50F6. Based on sequence similarity, it is predicted to have molecular function</span>: odorant binding. Based on sequence similarity, it is predicted to be involved in the biological process</span>: sensory perception of chemical stimulus. 2 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • (AAM71005) CG30074-PA [DrosMelano7227.FASTAC.txt]
  • CG30074-PA [Drosophila melanogaster]gi|45551098|ref|NP_725388.2| CG30074-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2R:join(10260629..10260715,10260771..10260866,10260926..10261264); ID=FBpp0086682; name=Obp50d-PA; parent=FBgn0050074,FBtr0087554; dbxref=GB_protein:AAM71005.1,FlyBase:FBpp0086682,FlyBase_Annotation_IDs:CG30074-PA,GB_protein:AAM71005.2,R [fly-100309-contam.fasta]
  • Odorant-binding protein 50d CG30074-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG30074-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2R:join(10260629..10260715,10260771..10260866,10260926..10261264); ID=FBpp0086682; name=Obp50d-PA; parent=FBgn0050074,FBtr0087554; dbxref=GB_protein:AAM71005.1,FlyBase:FBpp0086682,FlyBase_Annotation_IDs:CG30074-PA,GB_protein:AAM71005.2,REFSEQ:NP_725388,GB_protein:AAM71005; MD5=7a1222110addd59ab9eff7105211478d; length=173; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:join(10260629..10260715,10260771..10260866,10260926..10261264); ID=FBpp0086682; name=Obp50d-PA; parent=FBgn0050074,FBtr0087554; dbxref=GB_protein:AAM71005.1,FlyBase:FBpp0086682,FlyBase_Annotation_IDs:CG30074-PA,GB_protein:AAM71005.2,REFSEQ:NP_725388,GB_protein:AAM71005; MD5=7a1222110addd59ab9eff7105211478d; length=173; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Odorant-binding protein 50d OS=Drosophila melanogaster GN=Obp50d PE=4 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2R:join(10260629..10260715,10260771..10260866,10260926..10261264); ID=FBpp0086682; name=Obp50d-PA; parent=FBgn0050074,FBtr0087554; dbxref=GB_protein:AAM71005.1,FlyBase:FBpp0086682,FlyBase_Annotation_IDs:CG30074-PA,GB_protein:AAM71005.2,REFSEQ:NP_725388,GB_protein:AAM71005,FlyMine:FBpp0086682,modMine:FBpp0086682; MD5=7a1222110addd59ab9eff7105211478d; length=173; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2R:join(14373124..14373210,14373266..14373361,14373421..14373759); ID=FBpp0086682; name=Obp50d-PA; parent=FBgn0050074,FBtr0087554; dbxref=GB_protein:AAM71005.1,FlyBase:FBpp0086682,FlyBase_Annotation_IDs:CG30074-PA,GB_protein:AAM71005.2,REFSEQ:NP_725388,GB_protein:AAM71005,FlyMine:FBpp0086682,modMine:FBpp0086682; MD5=7a1222110addd59ab9eff7105211478d; length=173; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:join(14373124..14373210,14373266..14373361,14373421..14373759); ID=FBpp0086682; name=Obp50d-PA; parent=FBgn0050074,FBtr0087554; dbxref=GB_protein:AAM71005.1,FlyBase:FBpp0086682,FlyBase_Annotation_IDs:CG30074-PA,GB_protein:AAM71005.2,REFSEQ:NP_725388,GB_protein:AAM71005,FlyMine:FBpp0086682,modMine:FBpp0086682; MD5=7a1222110addd59ab9eff7105211478d; length=173; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FBpp0086682 type=protein; loc=2R:join(14373124..14373210,14373266..14373361,14373421..14373759); ID=FBpp0086682; name=Obp50d-PA; parent=FBgn0050074,FBtr0087554; dbxref=GB_protein:AAM71005.1,FlyBase:FBpp0086682,FlyBase_Annotation_IDs:CG30074-PA,GB_protein:AAM71005.2,REFSEQ:NP_725388,GB_protein:AAM71005,FlyMine:FBpp0086682,modMine:FBpp0086682; MD5=7a1222110addd59ab9eff7105211478d; length=173; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2R:join(14373124..14373210,14373266..14373361,14373421..14373759); ID=FBpp0086682; name=Obp50d-PA; parent=FBgn0050074,FBtr0087554; dbxref=GB_protein:AAM71005.1,FlyBase:FBpp0086682,FlyBase_Annotation_IDs:CG30074-PA,GB_protein:AAM71005.2,REFSEQ:NP_725388,GB_protein:AAM71005,UniProt/TrEMBL:A1Z9Q5,FlyMine:FBpp0086682,modMine:FBpp0086682; MD5=7a1222110addd59ab9eff7105211478d; length=173; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 173 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: sensory perception of chemical stimulus [UNKNOWN]
    transport [IEA]
    Molecular Function: odorant binding [UNKNOWN][IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHKLTWVLI FIPAFRAADP ICSQRPDVTA LRNCCKLPNL DFSSFNSKCS QYLVNGVHIS  60
   61 PCSFECIFRA ANALNGTHLV MENIEKMMKT ILGSDEFVHV YLDGFRSCGN QEKVLIKAMK 120
  121 RRRVPITGKC GSMAIMYGLC AHRYVYRNCP ESVWSKSATC NEAREYSIRC DDM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..173] FFAS03 1.76 Crystal structure of a pheromone binding protein from the cockroach Leucophaea maderae in complex with the fluorescent reporter ANS (1-anilinonaphtalene-8-sulfonic acid),

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • odorant binding
    		•  4.34740138836018 bayes_pls_golite062009
  • pheromone binding
    		•  2.50061185527994 bayes_pls_golite062009
  • binding
    		•  1.71868583149917 bayes_pls_golite062009
  • phenylalkylamine binding
    		•  1.10044668642283 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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