YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: Obp50d-PA
Organism: Drosophila melanogaster
Length: 173 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Obp50d-PA.

Description E-value Query
Range
Subject
Range
gi|54635706, gi|... - gi|54635706|gb|EAL25109.1| GA15623-PA [Drosophila pseudoobscura], gi|125807851|ref|XP_001360534.1| G...
145.0 [0..2] [170..12]

Back

Predicted Domain #1
Region A:
Residues: [1-173]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHKLTWVLI FIPAFRAADP ICSQRPDVTA LRNCCKLPNL DFSSFNSKCS QYLVNGVHIS  60
   61 PCSFECIFRA ANALNGTHLV MENIEKMMKT ILGSDEFVHV YLDGFRSCGN QEKVLIKAMK 120
  121 RRRVPITGKC GSMAIMYGLC AHRYVYRNCP ESVWSKSATC NEAREYSIRC DDM

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.76
Match: 1ow4A
Description: Crystal structure of a pheromone binding protein from the cockroach Leucophaea maderae in complex with the fluorescent reporter ANS (1-anilinonaphtalene-8-sulfonic acid),
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
odorant binding 4.34740138836018 bayes_pls_golite062009
pheromone binding 2.50061185527994 bayes_pls_golite062009
binding 1.71868583149917 bayes_pls_golite062009
phenylalkylamine binding 1.10044668642283 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle