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Protein Overview: vimar-PC

General Information:
Name(s) found: vimar-PC / FBpp0085514 [FlyBase]
Description(s) found:
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  • gi|45552489|ref|NP_995767.1| visceral mesodermal armadillo-repeats, isoform C [Drosophila melanogaster] [NCBI NR]
  • gi|45445450|gb|AAS64794.1| visceral mesodermal armadillo-repeats, isoform C [Drosophila melanogaster] [NCBI NR]
  • gi|206597318|gb|ACI15753.1| FI02061p [Drosophila melanogaster] [NCBI NR]
  • The gene visceral mesodermal armadillo-repeats is referred to in FlyBase by the symbol Dmel\vimar (CG3572, FBgn0022960). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:2862787..2873214. It has the cytological map location 42E1. Based on sequence similarity, it is predicted to have molecular function</span>: Ral GTPase binding. The biological processes in which it is involved are not known. 17 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
  • (AAS64794) CG3572-PC [DrosMelano7227.FASTAC.txt]
  • CG3572-PC, isoform C [Drosophila melanogaster]gi|45552489|ref|NP_995767.1| CG3572-PC [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2R:complement(2864058..2864662,2864721..2865107,2865197..2866105,2872917..2872923); ID=FBpp0085514; name=vimar-PC; parent=FBgn0022960,FBtr0086182; dbxref=FlyBase:FBpp0085514,FlyBase_Annotation_IDs:CG3572-PC,GB_protein:AAS64794.1,FlyBase_ [fly-100309-contam.fasta]
  • CG3572-PC, isoform C [Drosophila melanogaster] [nr-271106-contam.fasta]
  • visceral mesodermal armadillo-repeats CG3572-PC, isoform C [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2R:complement(2864058..2864662,2864721..2865107,2865197..2866105,2872917..2872923); ID=FBpp0085514; name=vimar-PC; parent=FBgn0022960,FBtr0086182; dbxref=FlyBase:FBpp0085514,FlyBase_Annotation_IDs:CG3572-PC,GB_protein:AAS64794.1,FlyBase_Annotation_IDs:CG3572-PA,REFSEQ:NP_995767,GB_protein:AAS64794; MD5=b7bb7a6565c61070784ea58dd90c9e4a; length=635; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:complement(2864058..2864662,2864721..2865107,2865197..2866105,2872917..2872923); ID=FBpp0085514; name=vimar-PC; parent=FBgn0022960,FBtr0086182; dbxref=FlyBase:FBpp0085514,FlyBase_Annotation_IDs:CG3572-PC,GB_protein:AAS64794.1,FlyBase_Annotation_IDs:CG3572-PA,REFSEQ:NP_995767,GB_protein:AAS64794; MD5=b7bb7a6565c61070784ea58dd90c9e4a; length=635; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • FI02061p OS=Drosophila melanogaster GN=vimar PE=2 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2R:complement(2864058..2864662,2864721..2865107,2865197..2866105,2872917..2872923); ID=FBpp0085514; name=vimar-PC; parent=FBgn0022960,FBtr0086182; dbxref=FlyBase:FBpp0085514,FlyBase_Annotation_IDs:CG3572-PC,GB_protein:AAS64794.1,FlyBase_Annotation_IDs:CG3572-PA,REFSEQ:NP_995767,GB_protein:AAS64794,FlyMine:FBpp0085514,modMine:FBpp0085514; MD5=b7bb7a6565c61070784ea58dd90c9e4a; length=635; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2R:complement(join(6985412..6985418,6977692..6978600,6977216..6977602,6976553..6977157)); ID=FBpp0085514; name=vimar-PC; parent=FBgn0022960,FBtr0086182; dbxref=FlyBase:FBpp0085514,FlyBase_Annotation_IDs:CG3572-PC,GB_protein:AAS64794.1,FlyBase_Annotation_IDs:CG3572-PA,REFSEQ:NP_995767,GB_protein:AAS64794,FlyMine:FBpp0085514,modMine:FBpp0085514; MD5=b7bb7a6565c61070784ea58dd90c9e4a; length=635; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:complement(join(6985412..6985418,6977692..6978600,6977216..6977602,6976553..6977157)); ID=FBpp0085514; name=vimar-PC; parent=FBgn0022960,FBtr0086182; dbxref=FlyBase:FBpp0085514,FlyBase_Annotation_IDs:CG3572-PC,GB_protein:AAS64794.1,FlyBase_Annotation_IDs:CG3572-PA,REFSEQ:NP_995767,GB_protein:AAS64794,FlyMine:FBpp0085514,modMine:FBpp0085514; MD5=b7bb7a6565c61070784ea58dd90c9e4a; length=635; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FI02061p OS=Drosophila melanogaster GN=vimar PE=1 SV=1 [DROME.fasta.20160308]
  • FBpp0085514 type=protein; loc=2R:complement(join(6985412..6985418,6977692..6978600,6977216..6977602,6976553..6977157)); ID=FBpp0085514; name=vimar-PC; parent=FBgn0022960,FBtr0086182; dbxref=FlyBase:FBpp0085514,FlyBase_Annotation_IDs:CG3572-PC,GB_protein:AAS64794.1,FlyBase_Annotation_IDs:CG3572-PA,REFSEQ:NP_995767,GB_protein:AAS64794,FlyMine:FBpp0085514,modMine:FBpp0085514; MD5=b7bb7a6565c61070784ea58dd90c9e4a; length=635; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2R:complement(join(6985412..6985418,6977692..6978600,6977216..6977602,6976553..6977157)); ID=FBpp0085514; name=vimar-PC; parent=FBgn0022960,FBtr0086182; dbxref=FlyBase:FBpp0085514,FlyBase_Annotation_IDs:CG3572-PC,GB_protein:AAS64794.1,FlyBase_Annotation_IDs:CG3572-PA,REFSEQ:NP_995767,GB_protein:AAS64794,UniProt/TrEMBL:A1Z6S7,FlyMine:FBpp0085514,modMine:FBpp0085514; MD5=b7bb7a6565c61070784ea58dd90c9e4a; length=635; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 635 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: Ral GTPase binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATAEIDDLI EKLKTTSVSP ANTTNLLCEI SATKDPKLFD KHELAECFLG LTKCDDTNVR  60
   61 KEAAKCIAEI TKSEVQRKKF TKRNIIAAFL ECLRQVPTSD GSMELPIQIC RALGNICYLN 120
  121 DEARDLILEL EGDAVLLRLL DITTIEDVAN AAQFIKVRGG LLSNYLLGGE GLAKRAMELG 180
  181 VMKKLQGIID IGASNVEQHE DLLLNTLPLL SILTENVSDL NFDSSLNIQL SRILAASTNP 240
  241 DLAEMCLELL HYQAESDEVK LILAKDGLCE TIYNLLEKYK TLASTSEARA LMKLACELIV 300
  301 LILTGDDSMH YLYTTPLLKN MVDWLDSTDI DLLTTGVLAL GNFARTDSHC IYFVEQQTMN 360
  361 KLLEVLAKNN GVKDDVRLQH ALLSALRNLV IPKPNKNAVI QAGLVQTILP MLEIHQPPVV 420
  421 FKLLGTLRMT VDGQEKLALE LLKNKTLIEQ LVHWSKSSDY AGVTGESLRL MAWLIKHAYL 480
  481 SKIAYALPRK GDAPAEQIAD KIPLTQDYDR SSLSEFLANE GTVEAMVSML TAQHLVMQNE 540
  541 ALIALCILSV VYLSQPSEAA QAQLLQDELV KCEVGKKLAE LISKSSDTMT KEIVENLQNC 600
  601 VNLLKSSEQL VAHLEQHNIN ELLKSIPILT EYCTL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..635] PSI-BLAST 67.0 No description for 2gl7A was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.373576425899935 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle