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Protein Overview: CG1646-PB

General Information:
Name(s) found: CG1646-PB / FBpp0084691 [FlyBase]
Description(s) found:
Found 17 descriptions.
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  • This gene is referred to in FlyBase by the symbol Dmel\CG1646 (CG1646, FBgn0039600). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 3R:24637826..24643076. It has the cytological map location 98E5. An electronic pipeline based on InterPro domains suggests that it has the molecular function</span>: heat shock protein binding. There is experimental evidence that it is involved in the biological process</span>: regulation of alternative nuclear mRNA splicing, via spliceosome. 4 alleles are reported. No phenotypic data is available. It has 6 annotated transcripts and 6 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 1066 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IC]
    U1 snRNP [ISS]
    Biological Process: regulation of alternative nuclear mRNA splicing, via spliceosome [IMP]
    nuclear mRNA splicing, via spliceosome [ISS]
    Molecular Function: heat shock protein binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASEGENVVM ESPGRRTRSG RKAASPAASL PTRSTRRTSK RNVQLSDHEE EAEEQVVMVQ  60
   61 EEEEPFRGTN TAEAPALEPQ FEETQHQIED DVEMLPAEAA GVDEKSSSFP FGTVAELHSE 120
  121 TSDDIKETRG QAGVDTLLAS LAGDNANSLP SVGGNDESDN VKKADFEYNV DSLQPQMEKM 180
  181 NSSEDSSSQH AIAEDLADAD TSNATIVNTE IVSEDELPLP SKPEINDAEE VSDEELPAPQ 240
  241 RAELPEDAEV ISEDELPASN NNNTATEPKA PLKRKAENES VKSTEDKDAS SHESSTKDKS 300
  301 SEQYNPGSPT SESNDAQPSE KKLKVEESEP KEKKKEKERD KDKEKDKDKD NNKDKEKERK 360
  361 KLPDLDKYWR AVKEDSTDFT GWTYLLQYVD NESDAEAARE AYDTFLSHYP YCYGYWRKYA 420
  421 DYEKRKGIKA NCYKVFERGL EAIPLSVDLW IHYLMHVKSN HGDDETFVRS QYERAVKACG 480
  481 LEFRSDKLWD AYIRWENESK RYHRVVQIYD RLLAIPTQGY NGHFDNFQDL INQHDVTITL 540
  541 ANEEVIRLRK DFHERQQSKS SKSSSKHRRD SSSSSKDKDS KEREREKDKD KDKDKDKEKR 600
  601 ETVGGGVGKS PKDTSETQVD ESDSTTDLTT ESESSHAASK PAMQIDFSDL STLNDEEVVS 660
  661 IRDRAISARR KVHKLTVSAV TARWSFEEGI KRPYFHVKPL ERAQLKNWKD YLDFEIEKGD 720
  721 RERVLVLFER CLIACALYDE FWLKMLRYLE SLEDQSGVVD LVRDVYRRAC RIHHPDKPSL 780
  781 HLMWAAFEEC QMNFDDAAEI LQRIDQRCPN LLQLSYRRIN VERRRGALDK CRELYKHYIE 840
  841 STKNKGIAGS LAIKYARFLN KICHDLDAGL AALQQALERD PANTRVALQM IDLCLQRPKV 900
  901 DEQEVVEIMD KFMARADIEP DQKVLFAQRK VEFLEDFGST ARGLQDAQRA LQQALTKAKE 960
  961 AQKKSDGSPS RKNSSSSKEG PVPTGSAAAA YNNGGSAAAV AGYNYGAANP YYGQQNTAAA1020
 1021 YPSQTPQQAS YDSYYNQWGY GSGGASANSG GSGYNYGQWS GYGNYY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..217] MSA 13.190996 View MSA. No confident structure predictions are available.
    2 View Details [218..355] deduced N/A No confident structure predictions are available.
    3 View Details [356..466] PSI-BLAST 41.69897 No description for 2ooeA was found.
    4 View Details [467..986] PSI-BLAST 22.522879 No description for 2gw1A was found.
    5 View Details [987..1066] FFAS03 0.981 crystal structure of the cytotoxic bacterial protein colicin B at 2.5 A resolution


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle