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Protein Overview: Trf4-1-PC, Trf4-...

General Information:
Name(s) found: FBpp0304114 [FlyBase]
FBpp0304113 [FlyBase]
FBpp0304112 [FlyBase]
Trf4-1-PE / FBpp0071159 [FlyBase]
Trf4-1-PC / FBpp0071158 [FlyBase]
Description(s) found:
Found 47 descriptions.
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  • type=protein; loc=X:join(8457406..8458408,8458517..8459197,8459410..8460089,8460330..8460971); ID=FBpp0304114; name=Trf4-1-PJ; parent=FBgn0030049,FBtr0331725; dbxref=REFSEQ:NP_001259340,GB_protein:AGB95183,FlyBase:FBpp0304114,FlyBase_Annotation_IDs:CG11265-PJ; MD5=3ba34bb6103727640d68db3cdd2274f3; length=1001; release=r5.56; species=Dmel; [FlyBase]
  • type=protein; loc=X:join(8457406..8458408,8458517..8459197,8459410..8460089,8460330..8460971); ID=FBpp0304113; name=Trf4-1-PI; parent=FBgn0030049,FBtr0331724; dbxref=REFSEQ:NP_572490,GB_protein:AAF46390,FlyBase:FBpp0304113,FlyBase_Annotation_IDs:CG11265-PI; MD5=3ba34bb6103727640d68db3cdd2274f3; length=1001; release=r5.56; species=Dmel; [FlyBase]
  • type=protein; loc=X:join(8457406..8458408,8458517..8459197,8459410..8460089,8460330..8460971); ID=FBpp0304112; name=Trf4-1-PH; parent=FBgn0030049,FBtr0331723; dbxref=REFSEQ:NP_996383,GB_protein:AAS65288,FlyBase:FBpp0304112,FlyBase_Annotation_IDs:CG11265-PH; MD5=3ba34bb6103727640d68db3cdd2274f3; length=1001; release=r5.56; species=Dmel; [FlyBase]
  • This gene is referred to in FlyBase by the symbol Dmel\Trf4-1 (CG11265, FBgn0030049). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:8454668..8461653. It has the cytological map location 7F4. There is experimental evidence that it has the molecular function</span>: polynucleotide adenylyltransferase activity. There is experimental evidence that it is involved in the biological process</span>: ncRNA polyadenylation during polyadenylation-dependent ncRNA catabolic process. 12 alleles are reported. The phenotypes of these alleles are annotated with: eye; wing. It has 4 annotated transcripts and 4 annotated polypeptides. [FlyBase]
  • This gene is referred to in FlyBase by the symbol Dmel\Trf4-1 (CG11265, FBgn0030049). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is X:8454668..8461653. It has the cytological map location 7F4. There is experimental evidence that it has the molecular function</span>: polynucleotide adenylyltransferase activity. There is experimental evidence that it is involved in the biological process</span>: ncRNA polyadenylation during polyadenylation-dependent ncRNA catabolic process. 12 alleles are reported. The phenotypes of these alleles are annotated with: eye; wing. It has 4 annotated transcripts and 4 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 1001 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: sister chromatid cohesion [NAS]
    ncRNA polyadenylation involved in polyadenylation-dependent ncRNA catabolic process [IMP]
    Molecular Function: DNA-directed DNA polymerase activity [NAS]
    DNA topoisomerase activity [ISS]
    polynucleotide adenylyltransferase activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPFVGWFQK EQEGPSLCTW LKIWETNAQE MGALLNQQLQ QATTINGSTS SSSSSSNSGN  60
   61 NNNNNNNNII NNTITNTTNN TGNNSSAKPY LSRPYSSLNR VLNFRADSLE ILQQQQQQQQ 120
  121 LNGTTQRNST NINTTSGGST SSSADSTTNR DNNSPANSSS TNGPGAGTGT STGAGGTGTN 180
  181 SPATTASSTA ATTTGPATSM SDTSNNPPQS TTTPASRTNS IYYNPSRKKR PENKAGGAHY 240
  241 YMNNHMEMIA KYKGEPWRKP DYPYGEGVIG LHEEIEHFYQ YVLPTPCEHA IRNEVVKRIE 300
  301 AVVHSIWPQA VVEIFGSFRT GLFLPTSDID LVVLGLWEKL PLRTLEFELV SRGIAEACTV 360
  361 RVLDKASVPI IKLTDRETQV KVDISFNMQS GVQSAELIKK FKRDYPVLEK LVLVLKQFLL 420
  421 LRDLNEVFTG GISSYSLILM CISFLQMHPR GIYHDTANLG VLLLEFFELY GRRFNYMKIG 480
  481 ISIKNGGRYM PKDELQRDMV DGHRPSLLCI EDPLTPGNDI GRSSYGVFQV QQAFKCAYRV 540
  541 LALAVSPLNL LGIDPRVNSI LGRIIHITDD VIDYREWIRE NFEHLVVVDR ISPLPTAAPT 600
  601 AYATANGAPK YVIMPSGAVV QQLYHHPVQV PTAHGHSHAH SHSHGHAHPG AHLCQPYVTG 660
  661 TTVSAVTTTT TMAVVTVGVS AGGVQQQQQQ QNATAHTHSQ QQTQNQSQSR HRRGSTSSGD 720
  721 DSEDSKDGDV VETTSSAQEV VDIALSTPNG LANMSMPMPV HAVGMPASNS WSGNGNGNGN 780
  781 SSSSTGSSPE IAHIAAQEMD PELEDQQQQQ QHQETSGGNG FIRPGDVGTG SNRGGGDGSG 840
  841 GRNYNQRNNH NSSGYYHQQY YVPPPMQQQL SKSNSSSNYH QQHHHSHSHG NHSHRQQHHH 900
  901 QQQHHHQQRP QHLRVGGGNR YQKSLGGSPI ISAGNASNSS SNCSNSSSSS GSNNSRLPPL 960
  961 RGTLVNSSSA ISIISISSES SIASSSSSSS RSGQDQQRDE R

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..152] deduced N/A No confident structure predictions are available.
    2 View Details [153..256] PSI-BLAST 29.522879 Structural Basis for UTP Specificity of RNA Editing TUTases From Trypanosoma Brucei
    3 View Details [257..721] PSI-BLAST 93.69897 Crystal structure of poly(A) polymerase in complex with 3'-dATP and magnesium chloride
    4 View Details [722..825] deduced N/A No confident structure predictions are available.
    5 View Details [826..1001] MSA 5.065995 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • catalytic activity
    		•  0.222270543382941 bayes_pls_golite062009
  • transferase activity
    		•  0.00393984128503999 bayes_pls_golite062009
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.81

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle