| Protein: | Trf4-1-PC, Trf4-... |
| Organism: | Drosophila melanogaster |
| Length: | 1001 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Trf4-1-PC, Trf4-....
| Description | E-value | Query Range |
Subject Range |
|
|
550.0 | [0..1] | [1001..1] |
|
Region A: Residues: [1-152] |
1 11 21 31 41 51
| | | | | |
1 MDPFVGWFQK EQEGPSLCTW LKIWETNAQE MGALLNQQLQ QATTINGSTS SSSSSSNSGN 60
61 NNNNNNNNII NNTITNTTNN TGNNSSAKPY LSRPYSSLNR VLNFRADSLE ILQQQQQQQQ 120
121 LNGTTQRNST NINTTSGGST SSSADSTTNR DN
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [153-256] |
1 11 21 31 41 51
| | | | | |
1 NSPANSSSTN GPGAGTGTST GAGGTGTNSP ATTASSTAAT TTGPATSMSD TSNNPPQSTT 60
61 TPASRTNSIY YNPSRKKRPE NKAGGAHYYM NNHMEMIAKY KGEP
|
| Detection Method: | |
| Confidence: | 29.522879 |
| Match: | 2b4vA |
| Description: | Structural Basis for UTP Specificity of RNA Editing TUTases From Trypanosoma Brucei |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [257-721] |
1 11 21 31 41 51
| | | | | |
1 WRKPDYPYGE GVIGLHEEIE HFYQYVLPTP CEHAIRNEVV KRIEAVVHSI WPQAVVEIFG 60
61 SFRTGLFLPT SDIDLVVLGL WEKLPLRTLE FELVSRGIAE ACTVRVLDKA SVPIIKLTDR 120
121 ETQVKVDISF NMQSGVQSAE LIKKFKRDYP VLEKLVLVLK QFLLLRDLNE VFTGGISSYS 180
181 LILMCISFLQ MHPRGIYHDT ANLGVLLLEF FELYGRRFNY MKIGISIKNG GRYMPKDELQ 240
241 RDMVDGHRPS LLCIEDPLTP GNDIGRSSYG VFQVQQAFKC AYRVLALAVS PLNLLGIDPR 300
301 VNSILGRIIH ITDDVIDYRE WIRENFEHLV VVDRISPLPT AAPTAYATAN GAPKYVIMPS 360
361 GAVVQQLYHH PVQVPTAHGH SHAHSHSHGH AHPGAHLCQP YVTGTTVSAV TTTTTMAVVT 420
421 VGVSAGGVQQ QQQQQNATAH THSQQQTQNQ SQSRHRRGST SSGDD
|
| Detection Method: | |
| Confidence: | 93.69897 |
| Match: | 1q78A |
| Description: | Crystal structure of poly(A) polymerase in complex with 3'-dATP and magnesium chloride |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| catalytic activity | 0.222270543382941 | bayes_pls_golite062009 |
| transferase activity | 0.00393984128503999 | bayes_pls_golite062009 |
|
Region A: Residues: [722-825] |
1 11 21 31 41 51
| | | | | |
1 SEDSKDGDVV ETTSSAQEVV DIALSTPNGL ANMSMPMPVH AVGMPASNSW SGNGNGNGNS 60
61 SSSTGSSPEI AHIAAQEMDP ELEDQQQQQQ HQETSGGNGF IRPG
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [826-1001] |
1 11 21 31 41 51
| | | | | |
1 DVGTGSNRGG GDGSGGRNYN QRNNHNSSGY YHQQYYVPPP MQQQLSKSNS SSNYHQQHHH 60
61 SHSHGNHSHR QQHHHQQQHH HQQRPQHLRV GGGNRYQKSL GGSPIISAGN ASNSSSNCSN 120
121 SSSSSGSNNS RLPPLRGTLV NSSSAISIIS ISSESSIASS SSSSSRSGQD QQRDER
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
