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Protein Overview: gi|33598968, gi|...

General Information:
Name(s) found: gi|57162284 [NCBI NR]
gi|57162127 [NCBI NR]
gi|57160618 [NCBI NR]
gi|55957794 [NCBI NR]
gi|33598968 [NCBI NR]
Description(s) found:
Found 19 descriptions.
SHOW ALL
  • gi|57162284|emb|CAI40209.1| LIM domain 7 [Homo sapiens] [NCBI NR]
  • gi|57162127|emb|CAI40007.1| LIM domain 7 [Homo sapiens] [NCBI NR]
  • gi|57160618|emb|CAI39480.1| LIM domain 7 [Homo sapiens] [NCBI NR]
  • gi|55957794|emb|CAI12422.1| LIM domain 7 [Homo sapiens] [NCBI NR]
  • gi|33598968|ref|NP_005349.3| LIM domain only 7 isoform 1 [Homo sapiens] [NCBI NR]
    • Organism: Homo sapiens
    Length: 1349 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKIRICHIF TFYSWMSYDV LFQRTELGAL EIWRQLICAH VCICVGWLYL RDRVCSKKDI  60
   61 ILRTEQNSGR TILIKAVTEK NFETKDFRAS LENGVLLCDL INKLKPGVIK KINRLSTPIA 120
  121 GLDNINVFLK ACEQIGLKEA QLFHPGDLQD LSNRVTVKQE ETDRRVKNVL ITLYWLGRKA 180
  181 QSNPYYNGPH LNLKAFENLL GQALTKALED SSFLKRSGRD SGYGDIWCPE RGEFLAPPRH 240
  241 HKREDSFESL DSLGSRSLTS CSSDITLRGG REGFESDTDS EFTFKMQDYN KDDMSYRRIS 300
  301 AVEPKTALPF NRFLPNKSRQ PSYVPAPLRK KKPDKHEDNR RSWASPVYTE ADGTFSRLFQ 360
  361 KIYGENGSKS MSDVSAEDVQ NLRQLRYEEM QKIKSQLKEQ DQKWQDDLAK WKDRRKSYTS 420
  421 DLQKKKEERE EIEKQALEKS KRSSKTFKEM LQDRESQNQK STVPSRRRMY SFDDVLEEGK 480
  481 RPPTMTVSEA SYQSERVEEK GATYPSEIPK EDSTTFAKRE DRVTTEIQLP SQSPVEEQSP 540
  541 ASLSSLRSRS TQMESTRVSA SLPRSYRKTD TVRLTSVVTP RPFGSQTRGI SSLPRSYTMD 600
  601 DAWKYNGDVE DIKRTPNNVV STPAPSPDAS QLASSLSSQK EVAATEEDVT RLPSPTSPFS 660
  661 SLSQDQAATS KATLSSTSGL DLMSESGEGE ISPQREVSRS QDQFSDMRIS INQTPGKSLD 720
  721 FGFTIKWDIP GIFVASVEAG SPAEFSQLQV DDEIIAINNT KFSYNDSKEW EEAMAKAQET 780
  781 GHLVMDVRRY GKAGSPETKW IDATSGIYNS EKSSNLSVTT DFSESLQSSN IESKEINGIH 840
  841 DESNAFESKA SESISLKNLK RRSQFFEQGS SDSVVPDLPV PTISAPSRWV WDQEEERKRQ 900
  901 ERWQKEQDRL LQEKYQREQE KLREEWQRAK QEAERENSKY LDEELMVLSS NSMSLTTREP 960
  961 SLATWEATWS EGSKSSDREG TRAGEEERRQ PQEEVVHEDQ GKKPQDQLVI ERERKWEQQL1020
 1021 QEEQEQKRLQ AEAEEQKRPA EEQKRQAEIE RETSVRIYQY RRPVDSYDIP KTEEASSGFL1080
 1081 PGDRNKSRST TELDDYSTNK NGNNKYLDQI GNMTSSQRRS KKEQVPSGAE LERQQILQEM1140
 1141 RKRTPLHNDN SWIRQRSASV NKEPVSLPGI MRRGESLDNL DSPRSNSWRQ PPWLNQPTGF1200
 1201 YASSSVQDFS RPPPQLVSTS NRAYMRNPSS SVPPPSAGSV KTSTTGVATT QSPTPRSHSP1260
 1261 SASQSGSQLR NRSVSGKRIC SYCNNILGKG AAMIIESLGL CYHLHCFKCV ACECDLGGSS1320
 1321 SGAEVRIRNH QLYCNDCYLR FKSGRPTAM

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run gi|14317902, gi|... No Comments Cheeseman, I.M., et al. (2004)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..182] PSI-BLAST 21.09691 Solution structure of the CH domain of human calponin-2
    2 View Details [183..533] PSI-BLAST 18.0 Heavy meromyosin subfragment
    3 View Details [534..624] PSI-BLAST 6.30103 Tropomyosin
    4 View Details [625..672] deduced N/A No confident structure predictions are available.
    5 View Details [673..810] FFAS03 3.27 Solution structure of the second PDZ domain of human KIAA1526 protein
    6 View Details [811..904] deduced N/A No confident structure predictions are available.
    7 View Details [905..1217] PSI-BLAST 4.69897 No description for 2i1jA was found.
    8 View Details [1218..1277] deduced N/A No confident structure predictions are available.
    9 View Details [1278..1349] PSI-BLAST 5.30103 Solution structure of Skeletal muscle LIM-protein 1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5
    Term Confidence Notes
  • protein binding
    		•  2.84584532725855 bayes_pls_golite062009
  • binding
    		•  2.64995560308714 bayes_pls_golite062009
  • beta-catenin binding
    		•  1.37028689668988 bayes_pls_golite062009
  • receptor binding
    		•  0.626200183605506 bayes_pls_golite062009
  • protein domain specific binding
    		•  0.452874488417277 bayes_pls_golite062009
  • cell adhesion molecule binding
    		•  0.37866485872822 bayes_pls_golite062009
    6 No functions predicted.
    7 No functions predicted.
    8 No functions predicted.
    9
    Term Confidence Notes
  • binding
    		•  2.47976310866464 bayes_pls_golite062009
  • protein binding
    		•  2.06940714324924 bayes_pls_golite062009
  • receptor activity
    		•  1.70176463088443 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.85

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle