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Protein Overview: YGGW_ECOLI

General Information:
Name(s) found: YGGW_ECOLI [Swiss-Prot]
Description(s) found:
Found 7 descriptions.
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  • Oxygen-independent coproporphyrinogen III oxidase-like protein yggW (EC 1.3.99.-) - Escherichia coli [Swiss-Prot]
    • Organism: Escherichia coli
    Length: 378 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKLPPLSLY IHIPWCVQKC PYCDFNSHAL KGEVPHDDYV QHLLNDLDND VAYAQGREVK  60
   61 TIFIGGGTPS LLSGPAMQTL LDGVRARLPL AADAEITMEA NPGTVEADRF VDYQRAGVNR 120
  121 ISIGVQSFSE EKLKRLGRIH GPQEAKRAAK LASGLGLRSF NLDLMHGLPD QSLEEALGDL 180
  181 RQAIELNPPH LSWYQLTIEP NTLFGSRPPV LPDDDALWDI FEQGHQLLTA AGYQQYETSA 240
  241 YAKPGYQCQH NLNYWRFGDY IGIGCGAHGK VTFPDGRILR TTKTRHPRGF MQGRYLESQR 300
  301 DVEATDKPFE FFMNRFRLLE AAPRVEFIAY TGLCEDVIRP QLDEAIAQGY LTECADYWQI 360
  361 TEHGKLFLNS LLELFLAE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..378] PSI-BLAST 88.154902 Coproporphyrinogen III oxidase (HemN) from Escherichia coli is a Radical SAM enzyme.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • coproporphyrinogen oxidase activity
    		•  2.41520078366277 bayes_pls_golite062009
  • biotin synthase activity
    		•  2.08611410724267 bayes_pls_golite062009
  • radical SAM enzyme activity
    		•  1.93582371651697 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor
    		•  1.85924424492023 bayes_pls_golite062009
  • catalytic activity
    		•  1.48331922124015 bayes_pls_golite062009
  • sulfurtransferase activity
    		•  0.947420499060224 bayes_pls_golite062009
  • transferase activity, transferring sulfur-containing groups
    		•  0.107588242235537 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle