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Protein Overview: SYCP2_ARATH

General Information:
Name(s) found: SYCP2_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|66394508|gb|AAY46120.1| synaptonemal complex central region protein ZYP1b [Arabidopsis thaliana] [NCBI NR]
  • gi|47606231|sp|P61430.1|SYCP2_ARATH RecName: Full=Synaptonemal complex protein 2; AltName: Full=Synaptonemal complex central region protein ZYP1b [NCBI NR]
  • gi|18395097|ref|NP_564164.1| ZYP1b [Arabidopsis thaliana] [NCBI NR]
  • (P61430) Hypothetical protein At1g22275 [Swiss-Prot]
  • Synaptonemal complex protein 2 OS=Arabidopsis thaliana GN=ZYP1B PE=2 SV=1 [Swiss-Prot]
  • Hypothetical protein At1g22275gi|18395097|ref|NP_564164.1| expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Hypothetical protein At1g22275 [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ZYP1, ZYP1b | ZYP1b | chr1:7867234-7872055 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • synaptonemal complex central region protein ZYP1b [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • Synaptonemal complex protein 2 (Synaptonemal complex central region protein ZYP1b) [nr-271106-contam.fasta]
  • unknown protein [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ZYP1b, ZYP1 | Myosin heavy chain-related protein | chr1:7867245-7872066 FORWARD LENGTH=856 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
    • Organism: Arabidopsis thaliana
    Length: 856 amino acids

    Gene Ontology:
    Cellular Component: synaptonemal complex [IDA]
    Biological Process: reciprocal meiotic recombination [IMP]
    synapsis [IMP]
    Molecular Function: protein binding [IPI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKLGFPAMK SFDQLRSLPG SAKTYFFSTR PPQDSVSSGS FSNLKLTAEK LVKDQAAMRT  60
   61 DLELANCKLK KSMEHVYALE EKLQSAFNEN AKLRVRQKED EKLWRGLESK FSSTKTLCDQ 120
  121 LTETLQHLAS QVQDAEKDKG FFETKFNTSS EAINSLNQQM RDMSLRLDAA KEEITSRDKE 180
  181 LEELKLEKQH KEMFYQTERC GTASLIEKKD AVITELETTA AERKLKIEKL NSQLEKLHLE 240
  241 LTTKEDEVIH LVSIQEKLEK EKTNVQLSSD ELFEKLVRSE QEVKKLDELV HYLIAELTEL 300
  301 DKKNLTFKEK FDKLSGLYDT HFMLLRKDRD LASDRAQRSF DQLQGELFRV AAEKEALESS 360
  361 GNELSEKIVE LQNDKESLIS QLSGVRCSAS QTIDKLEFEA KGLVLKNAET ESVISKLKEE 420
  421 IDTLLESVRT SEDKKKELSI KLSSLEIESK DKYEKLQADA QRQVGELETL QKESESHQLQ 480
  481 ADLLAKEVNQ LQTIIEEKGH LILQCNENEK NINQQIIKDK ELLATAETKL AEAKKQYDLM 540
  541 LESKQLELSR HLKELSQRND QAINEIRRKY DVEKHEIINS EKDKVEKIIK ELSTKYDKGL 600
  601 SDCKEESKRQ LLTIQEEHSS RILNIREEHE SKELNLKAKY DQELRQNQIQ AENELKERIT 660
  661 ALKSEHDAQL KAFKCQYEDD CKKLQEELDL QRKKEERQRA LVQLQWKVMS DNPPEEQEVN 720
  721 SNKDYSHSSV KVKESRLGGN KRSEHITESP FVKAKVTSVS NILKEATNPK HHSKVTHREY 780
  781 EVETNNGRIP KRRKTRQTTM FQEPQRRSTR LTPKLMTPTI IAKETAMADH PHSANIGDLF 840
  841 SEGSLNPYAD DPYAFD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..304] PSI-BLAST 9.69897 Tropomyosin
    2 View Details [305..494] FFAS03 2.27 Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain
    3 View Details [495..856] PSI-BLAST 17.09691 Heavy meromyosin subfragment


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle