| Protein: | SYCP2_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 856 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SYCP2_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
432.0 | [0..3] | [845..1920] |
|
Region A: Residues: [1-304] |
1 11 21 31 41 51
| | | | | |
1 MQKLGFPAMK SFDQLRSLPG SAKTYFFSTR PPQDSVSSGS FSNLKLTAEK LVKDQAAMRT 60
61 DLELANCKLK KSMEHVYALE EKLQSAFNEN AKLRVRQKED EKLWRGLESK FSSTKTLCDQ 120
121 LTETLQHLAS QVQDAEKDKG FFETKFNTSS EAINSLNQQM RDMSLRLDAA KEEITSRDKE 180
181 LEELKLEKQH KEMFYQTERC GTASLIEKKD AVITELETTA AERKLKIEKL NSQLEKLHLE 240
241 LTTKEDEVIH LVSIQEKLEK EKTNVQLSSD ELFEKLVRSE QEVKKLDELV HYLIAELTEL 300
301 DKKN
|
| Detection Method: |  |
| Confidence: | 9.69897 |
| Match: | 1c1gA |
| Description: | Tropomyosin |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [305-494] |
1 11 21 31 41 51
| | | | | |
1 LTFKEKFDKL SGLYDTHFML LRKDRDLASD RAQRSFDQLQ GELFRVAAEK EALESSGNEL 60
61 SEKIVELQND KESLISQLSG VRCSASQTID KLEFEAKGLV LKNAETESVI SKLKEEIDTL 120
121 LESVRTSEDK KKELSIKLSS LEIESKDKYE KLQADAQRQV GELETLQKES ESHQLQADLL 180
181 AKEVNQLQTI
|
| Detection Method: | |
| Confidence: | 2.27 |
| Match: | 1jchA |
| Description: | Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [495-856] |
1 11 21 31 41 51
| | | | | |
1 IEEKGHLILQ CNENEKNINQ QIIKDKELLA TAETKLAEAK KQYDLMLESK QLELSRHLKE 60
61 LSQRNDQAIN EIRRKYDVEK HEIINSEKDK VEKIIKELST KYDKGLSDCK EESKRQLLTI 120
121 QEEHSSRILN IREEHESKEL NLKAKYDQEL RQNQIQAENE LKERITALKS EHDAQLKAFK 180
181 CQYEDDCKKL QEELDLQRKK EERQRALVQL QWKVMSDNPP EEQEVNSNKD YSHSSVKVKE 240
241 SRLGGNKRSE HITESPFVKA KVTSVSNILK EATNPKHHSK VTHREYEVET NNGRIPKRRK 300
301 TRQTTMFQEP QRRSTRLTPK LMTPTIIAKE TAMADHPHSA NIGDLFSEGS LNPYADDPYA 360
361 FD
|
| Detection Method: | |
| Confidence: | 17.09691 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
