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Protein Overview: VIRD1_AGRFC

General Information:
Name(s) found: VIRD1_AGRFC [Swiss-Prot]
Description(s) found:
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  • gi|41223311|ref|NP_396502.2| virA/G regulated topoisomerase [Agrobacterium tumefaciens str. C58] [NCBI NR]
  • gi|17939314|ref|NP_536299.1| virA/G regulated protein [Agrobacterium tumefaciens str. C58] [NCBI NR]
  • gi|17744212|gb|AAL46417.1| virA/G regulated protein [Agrobacterium tumefaciens str. C58] [NCBI NR]
  • gi|159141791|gb|AAK90943.2| virA/G regulated topoisomerase [Agrobacterium tumefaciens str. C58] [NCBI NR]
  • gi|138461|sp|P18591.1|VIRD1_AGRT5 RecName: Full=T-DNA border endonuclease virD1 [NCBI NR]
  • T-DNA border endonuclease virD1 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=virD1 PE=1 SV=1 [Swiss-Prot]
  • T-DNA border endonuclease virD1 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=virD1 PE=1 SV=1 [Swiss-Prot]
  • (P18591) T-DNA border endonuclease virD1 (EC 3.1.-.-) [Swiss-Prot]
  • T-DNA border endonuclease accessory protein [Agrobacterium tumefaciens str. C58]gi|17939314|ref|NP_536299.1| virA/G regulated protein [Agrobacterium tumefaciens str. C58]gi|6498328|dbj|BAA87780.1| tiorf155 [Agrobacterium tumefaciens]gi|17744212|gb|AAL4 [nrdb_11152004_Chlamydomonas]
  • T-DNA border endonuclease virD1 [nr-271106-contam.fasta]
  • virA/G regulated protein [Agrobacterium tumefaciens str. C58] [nr-271106-contam.fasta]
  • T-DNA border endonuclease accessory protein [Agrobacterium tumefaciens str. C58] [nr-271106-contam.fasta]
    • Organism: Agrobacterium tumefaciens str. C58
    Length: 147 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: nuclear import [IDALink to PubMed article]
    Molecular Function: DNA binding [IDALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQGSRPTSS DIAVNQRECV KVEGFKVVST RLRSAEYESF SHQARLLGLS DSMAIRVAVR  60
   61 RIGGFLEIDA ETRHRMEAIL QSIGTLSSNI AALLSAYAEN PTMDLEALRA ERIAFGKSFA 120
  121 DLDGLLRSIL SVSRRRIDGC SLLKDAL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..147] Pfam 116.619789 No description for PF07328.2 was found. Confident ab initio structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.87

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle