YRC Public Data Repository - Protein Structure Prediction

Protein:	VIRD1_AGRFC
Organism:	Agrobacterium tumefaciens str. C58
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VIRD1_AGRFC.

Description	E-value	Query Range	Subject Range
gi\|15163441 - gi\|15163441\|gb\|AAK90943.1\| AGR_pTi_19p [Agrobacterium tumefaciens str. C58]	279.0	[0..1]	[147..36]
VIRD1_AGRRH - T-DNA border endonuclease virD1 OS=Agrobacterium rhizogenes GN=virD1 PE=4 SV=1	263.0	[0..1]	[147..1]
gi\|18033176 - gi\|18033176\|gb\|AAL57023.1\|AF329849_17 VirD1 [Agrobacterium tumefaciens]	251.0	[0..1]	[146..1]
gi\|86359769, gi\|... - gi\|86359769\|ref\|YP_471660.1\| T-DNA border endonuclease, VirD1 protein [Rhizobium etli CFN 42], gi\|86...	232.0	[0..1]	[147..1]
gi\|154711 - gi\|154711\|gb\|AAA98365.1\| virulence protein	198.0	[0..1]	[105..1]
gi\|115259661, gi... - gi\|116255013\|ref\|YP_770848.1\| putative endonuclease [Rhizobium leguminosarum bv. viciae 3841], gi\|11...	123.0	[0..10]	[146..11]
gi\|115292954, gi... - gi\|115345633\|ref\|YP_771815.1\| VirD1 [Roseobacter denitrificans OCh 114], gi\|115292954\|gb\|ABI93407.1\|...	73.0	[0..26]	[146..21]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQGSRPTSS DIAVNQRECV KVEGFKVVST RLRSAEYESF SHQARLLGLS DSMAIRVAVR  60
   61 RIGGFLEIDA ETRHRMEAIL QSIGTLSSNI AALLSAYAEN PTMDLEALRA ERIAFGKSFA 120
  121 DLDGLLRSIL SVSRRRIDGC SLLKDAL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	116.619789
Match:	PF07328.2
Description:	No description for PF07328.2 was found.

Shown below is our most confident prediction for this domain.
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		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.941	N/A	N/A	a.24.9	alpha-catenin/vinculin

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits