YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: set-25

General Information:
Name(s) found: set-25 / CE41469 [WormBase]
Description(s) found:
SHOW ONLY BEST
  • WBGene00012802 locus:set-25 status:Partially_confirmed UniProt:G5EEU2 protein_id:CAA16332.3 [WormBase]
  • gi|193210831|ref|NP_499738.3| SET (trithorax/polycomb) domain containing family member (set-25) [Caenorhabditis elegans] [NCBI NR]
  • gi|154147358|emb|CAA16332.3| C. elegans protein Y43F4B.3, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|154147334|emb|CAL22704.2| C. elegans protein Y43F4B.3, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • CE41469 WBGene00012802 locus:set-25 status:Partially_confirmed UniProt:O45932_CAEEL protein_id:CAL22704.2 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE41469 WBGene00012802 locus:set-25 status:Partially_confirmed UniProt:O45932_CAEEL protein_id:CAL22704.2| [wormORF-contam.fasta]
  • CE41469 WBGene00012802 locus:set-25 status:Partially_confirmed TR:O45932 protein_id:CAA16332.2 [WormBase_C-elegans_wp180_08-19-2007_reversed.fasta]
  • CE41469 WBGene00012802 locus:set-25 status:Partially_confirmed UniProt:O45932 protein_id:CAL22704.2 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE41469 WBGene00012802 locus:set-25 status:Partially_confirmed UniProt:G5EEU2 protein_id:CAA16332.3 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • SET (Trithorax/polycomb) domain containing OS=Caenorhabditis elegans GN=set-25 PE=4 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 714 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    Biological Process: chromatin modification [IEALink to PubMed article]
    DNA repair [IMPLink to PubMed article]
    Molecular Function: histone-lysine N-methyltransferase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPAWGTSTE ATASHAGWDG DDEGDIRAAY TEDEKKENIP PISLTSVSTN GAYPGQKRRR  60
   61 SESVRTLKPE CPPEETQRLR QRRRISATDA TQSSRTMNVI EDRKPRVNRA RKSQDAPSTS 120
  121 TCGFETPVGT KRKSKAADSQ KPPKQSKLRK IDEASTSKAV DNSSKDGKKT TKPAVTQSNR 180
  181 RRSGLSLRPV PIETIFSESS GRESSTEDEA DVSHQQRVEK IAKNPIMVVV LPLGPGNYPN 240
  241 NERITVVSTY KSRVNKNCNE ARRAQRHGSW SRKGIAFPGI PTKKFTKSDL AKYGAHASNW 300
  301 PAQAAFRSEE GKILIYYEGW TCLTLHRLSV EECARTAPTI LEEMSIRDKF IETVKSAAAE 360
  361 EAKLVVEKNQ ENGIELTLDE ALKQIFIEPV PQSSPENVFW IYQDLSYFHT MDNRDLGLAP 420
  421 VFYISSYTQS VRPPCYAYTA INIVDVDAYK RCLESRANMS FADLTGQKIW MPTRSKACEN 480
  481 GTKCKCDARF MFLYDPHDVT NLECTPDGKV DFTDFKIDNA RIVMECSDAC GCSLDCPRRS 540
  541 LQRGQQHPLA VYYEGPEKGF GVRAAANIKA GELVCEYTGD VTLLPTSDPV ASSSTKTDDG 600
  601 EEQENPEAPE RVDSSYDAAF NAMDTKIIIS AKKTGNISRF INHSCDPSSV FVEVYSRRFE 660
  661 EDPLIPRVAV YAIKDIALGE EITIAYYEPG IEWKRSSVKC RCKSTKCMGT LPAF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..174] MSA 7.237996 View MSA. No confident structure predictions are available.
    2 View Details [175..336] MSA 2.254995 View MSA. No confident structure predictions are available.
    3 View Details [337..714] PSI-BLAST 71.0 No description for 2igqA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle