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Protein Overview: HDG3_ARATH

General Information:
Name(s) found: HDG3_ARATH [Swiss-Prot]
Description(s) found:
Found 6 descriptions.
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  • Homeobox-leucine zipper protein HDG3 OS=Arabidopsis thaliana GN=HDG3 PE=2 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 725 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA][ISS]
    Biological Process: regulation of transcription, DNA-dependent [ISS]
    cotyledon development [IGI]
    Molecular Function: DNA binding [ISS]
    transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQSNMVPVA NNGDNNNDNE NNNNNNNNGG TDNTNAGNDS GDQDFDSGNT SSGNHGEGLG  60
   61 NNQAPRHKKK KYNRHTQLQI SEMEAFFREC PHPDDKQRYD LSAQLGLDPV QIKFWFQNKR 120
  121 TQNKNQQERF ENSELRNLNN HLRSENQRLR EAIHQALCPK CGGQTAIGEM TFEEHHLRIL 180
  181 NARLTEEIKQ LSVTAEKISR LTGIPVRSHP RVSPPNPPPN FEFGMGSKGN VGNHSRETTG 240
  241 PADANTKPII MELAFGAMEE LLVMAQVAEP LWMGGFNGTS LALNLDEYEK TFRTGLGPRL 300
  301 GGFRTEASRE TALVAMCPTG IVEMLMQENL WSTMFAGIVG RARTHEQIMA DAAGNFNGNL 360
  361 QIMSAEYQVL SPLVTTRESY FVRYCKQQGE GLWAVVDISI DHLLPNINLK CRRRPSGCLI 420
  421 QEMHSGYSKV TWVEHVEVDD AGSYSIFEKL ICTGQAFAAN RWVGTLVRQC ERISSILSTD 480
  481 FQSVDSGDHI TLTNHGKMSM LKIAERIART FFAGMTNATG STIFSGVEGE DIRVMTMKSV 540
  541 NDPGKPPGVI ICAATSFWLP APPNTVFDFL REATHRHNWD VLCNGEMMHK IAEITNGIDK 600
  601 RNCASLLRHG HTSKSKMMIV QETSTDPTAS FVLYAPVDMT SMDITLHGGG DPDFVVILPS 660
  661 GFAIFPDGTG KPGGKEGGSL LTISFQMLVE SGPEARLSVS SVATTENLIR TTVRRIKDLF 720
  721 PCQTA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..128] PSI-BLAST 14.39794 Homeobox protein hox-b1
    2 View Details [129..283] deduced N/A No confident structure predictions are available.
    3 View Details [284..431] PSI-BLAST 8.30103 Smad1
    4 View Details [432..607] MSA 1.059965 View MSA. No confident structure predictions are available.
    5 View Details [608..725] MSA 3.058984 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle