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Protein Overview: TRPB_HELPY

General Information:
Name(s) found: TRPB_HELPY [Swiss-Prot]
Description(s) found:
Found 6 descriptions.
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  • Tryptophan synthase beta chain OS=Helicobacter pylori GN=trpB PE=3 SV=1 [Swiss-Prot]
    • Organism: Helicobacter pylori
    Length: 393 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKKAYFGEF GGSFVSELLV PALRELEQAF DACLKDEKFQ KEYFRLLKDF VGRPSPLTLC  60
   61 QNIVSNPKVK LYLKREDLIH GGAHKTNQAL GQALLAKKMG KTRIIAETGA GQHGVATAIA 120
  121 CALLNLKCVV FMGSKDIKRQ EMNVFRMHLL GAEVREVNSG SATLKDAVNE ALRDWASSYK 180
  181 DTHYLLGTAA GPHPYPTMVK TFQKMIGDEV KSQILEKENR LPDYVIACVG GGSNAIGIFS 240
  241 AFLNDKEVKL IGVEPAGLGL ETNKHGATLN KGRVGILHGN KTYLLQDDEG QIAESHSISA 300
  301 GLDYPGVGPE HSYLKESGRA VYESASDAEA LEAFKLLCQK EGIIPALESS HALAYALKLA 360
  361 QKCEEESIIV VNLSGRGDKD LSTVYNALKG GLK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..393] PSI-BLAST 110.0 X-ray crystal structure of the Tryptophan Synthase b2 Subunit from Hyperthermophile, Pyrococcus furiosus

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • tryptophan synthase activity
    		•  3.77857340461162 bayes_pls_golite062009
  • catalytic activity
    		•  2.76038225023173 bayes_pls_golite062009
  • lyase activity
    		•  2.54165185299539 bayes_pls_golite062009
  • carbon-oxygen lyase activity, acting on phosphates
    		•  1.82148750304597 bayes_pls_golite062009
  • cysteine synthase activity
    		•  1.54736143994982 bayes_pls_golite062009
  • carbon-oxygen lyase activity
    		•  1.52790731142158 bayes_pls_golite062009
  • ammonia-lyase activity
    		•  0.943946746392831 bayes_pls_golite062009
  • threonine synthase activity
    		•  0.86525519885835 bayes_pls_golite062009
  • carbon-nitrogen lyase activity
    		•  0.8463142805916 bayes_pls_golite062009
  • L-threonine ammonia-lyase activity
    		•  0.57533596285038 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle