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Protein Overview: SDE3_ARATH

General Information:
Name(s) found: SDE3_ARATH [Swiss-Prot]
Description(s) found:
Found 11 descriptions.
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  • Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 1002 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: virus induced gene silencing [IMP]
    Molecular Function: RNA helicase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVSGYKSDD EYSVIADKGE IGFIDYQNDG SSGCYNPFDE GPVVVSVPFP FKKEKPQSVT  60
   61 VGETSFDSFT VKNTMDEPVD LWTKIYASNP EDSFTLSILK PPSKDSDLKE RQCFYETFTL 120
  121 EDRMLEPGDT LTIWVSCKPK DIGLHTTVVT VDWGSDRVER VVFLLAEDKI SSSLTSNRPY 180
  181 SRSRRAPKKD FAVDDYVKGS RPSKVVERSF RNRLPLYEIP KEIREMIENK EFPDDLNEGL 240
  241 TARNYANYYK TLLIMEELQL EEDMRAYDME NVSMKRRGIY LSLEVPGLAE RRPSLVHGDF 300
  301 IFVRHAYDDG TDHAYQGFVH RVEADEVHMK FASEFHQRHT AGSVYNVRFT YNRINTRRLY 360
  361 QAVDAAEMLD PNFLFPSLHS GKRMIKTKPF VPISPALNAE QICSIEMVLG CKGAPPYVIH 420
  421 GPPGTGKTMT LVEAIVQLYT TQRNARVLVC APSNSAADHI LEKLLCLEGV RIKDNEIFRL 480
  481 NAATRSYEEI KPEIIRFCFF DELIFKCPPL KALTRYKLVV STYMSASLLN AEGVNRGHFT 540
  541 HILLDEAGQA SEPENMIAVS NLCLTETVVV LAGDPRQLGP VIYSRDAESL GLGKSYLERL 600
  601 FECDYYCEGD ENYVTKLVKN YRCHPEILDL PSKLFYDGEL VASKEDTDSV LASLNFLPNK 660
  661 EFPMVFYGIQ GCDEREGNNP SWFNRIEISK VIETIKRLTA NDCVQEEDIG VITPYRQQVM 720
  721 KIKEVLDRLD MTEVKVGSVE QFQGQEKQVI IISTVRSTIK HNEFDRAYCL GFLSNPRRFN 780
  781 VAITRAISLL VIIGNPHIIC KDMNWNKLLW RCVDNNAYQG CGLPEQEEFV EEPFKQEGSS 840
  841 NGPQYPPEAE WNNSGELNNG GANENGEWSD GWNNNGGTKE KNEWSDGWNS NGGGTKKKDE 900
  901 WSDGWDNNGG TNGINQEGSS NAPQDPQEAE WNDSGEVKNG GTKEKDVRSD GWNNNGGKNE 960
  961 KEECCDGWKD GGSGEEIKNG GKFETRGDFV AKEEDEWSDG WK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..216] PSI-BLAST 16.69897 No description for 2iykA was found.
    2 View Details [217..388] PSI-BLAST 112.0 No description for 2gjkA was found.
    3 View Details [389..1002] PSI-BLAST 81.69897 No description for 2is1A was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.90

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle