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View Structure Prediction Details

Protein: SDE3_ARATH
Organism: Arabidopsis thaliana
Length: 1002 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for SDE3_ARATH.

Predicted Domain #1
Region A:
Residues: [1-216]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVSGYKSDD EYSVIADKGE IGFIDYQNDG SSGCYNPFDE GPVVVSVPFP FKKEKPQSVT  60
   61 VGETSFDSFT VKNTMDEPVD LWTKIYASNP EDSFTLSILK PPSKDSDLKE RQCFYETFTL 120
  121 EDRMLEPGDT LTIWVSCKPK DIGLHTTVVT VDWGSDRVER VVFLLAEDKI SSSLTSNRPY 180
  181 SRSRRAPKKD FAVDDYVKGS RPSKVVERSF RNRLPL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.69897
Match: 2iykA
Description: No description for 2iykA was found.

Predicted Domain #2
Region A:
Residues: [217-388]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YEIPKEIREM IENKEFPDDL NEGLTARNYA NYYKTLLIME ELQLEEDMRA YDMENVSMKR  60
   61 RGIYLSLEVP GLAERRPSLV HGDFIFVRHA YDDGTDHAYQ GFVHRVEADE VHMKFASEFH 120
  121 QRHTAGSVYN VRFTYNRINT RRLYQAVDAA EMLDPNFLFP SLHSGKRMIK TK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 112.0
Match: 2gjkA
Description: No description for 2gjkA was found.

Predicted Domain #3
Region A:
Residues: [389-1002]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFVPISPALN AEQICSIEMV LGCKGAPPYV IHGPPGTGKT MTLVEAIVQL YTTQRNARVL  60
   61 VCAPSNSAAD HILEKLLCLE GVRIKDNEIF RLNAATRSYE EIKPEIIRFC FFDELIFKCP 120
  121 PLKALTRYKL VVSTYMSASL LNAEGVNRGH FTHILLDEAG QASEPENMIA VSNLCLTETV 180
  181 VVLAGDPRQL GPVIYSRDAE SLGLGKSYLE RLFECDYYCE GDENYVTKLV KNYRCHPEIL 240
  241 DLPSKLFYDG ELVASKEDTD SVLASLNFLP NKEFPMVFYG IQGCDEREGN NPSWFNRIEI 300
  301 SKVIETIKRL TANDCVQEED IGVITPYRQQ VMKIKEVLDR LDMTEVKVGS VEQFQGQEKQ 360
  361 VIIISTVRST IKHNEFDRAY CLGFLSNPRR FNVAITRAIS LLVIIGNPHI ICKDMNWNKL 420
  421 LWRCVDNNAY QGCGLPEQEE FVEEPFKQEG SSNGPQYPPE AEWNNSGELN NGGANENGEW 480
  481 SDGWNNNGGT KEKNEWSDGW NSNGGGTKKK DEWSDGWDNN GGTNGINQEG SSNAPQDPQE 540
  541 AEWNDSGEVK NGGTKEKDVR SDGWNNNGGK NEKEECCDGW KDGGSGEEIK NGGKFETRGD 600
  601 FVAKEEDEWS DGWK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 81.69897
Match: 2is1A
Description: No description for 2is1A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle