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Protein Overview: RSMB_RAT

General Information:
Name(s) found: RSMB_RAT [Swiss-Prot]
Description(s) found:
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  • gi|207010|gb|AAA42159.1| small nuclear ribonucleoparticle-associated protein [NCBI NR]
  • gi|134545|sp|P17136.1|RSMB_RAT RecName: Full=Small nuclear ribonucleoprotein-associated protein B; Short=snRNP-B; Short=Sm protein B; Short=Sm-B; Short=SmB; AltName: Full=SM11 [NCBI NR]
  • pir||B34503 small nuclear ribonucleoprotein-associated protein Sm11, cardiac - rat (fragment) [NCBI NR]
  • Small nuclear ribonucleoprotein-associated protein B (Fragment) OS=Rattus norvegicus GN=Snrpb PE=2 SV=1 [Swiss-Prot]
  • Small nuclear ribonucleoprotein associated protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB) (SM11)gi|112306|pir||B34503 small nuclear ribonucleoprotein-associated protein Sm11, cardiac - rat (fragment)gi|207010|gb|AAA42159.1| small nuclear ribonucleopart [nrdb_11152004_Chlamydomonas]
  • Tax_Id=10116 Small nuclear ribonucleoprotein associated protein B [EBI-IPI_rat_3.05_04-04-2005_origrev.fasta]
  • Small nuclear ribonucleoprotein-associated protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB) (SM11) [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • small nuclear ribonucleoparticle-associated protein [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Tax_Id=10116 SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta]
    • Organism: Rattus norvegicus
    Length: 214 amino acids

    Gene Ontology:
    Cellular Component: nucleus [UNKNOWN][TAS]
    cytoplasm [UNKNOWN][IEA]
    histone pre-mRNA 3'end processing complex [IEA]
    cytosol [UNKNOWN]
    U7 snRNP [UNKNOWN]
    nucleoplasm [UNKNOWN]
    Biological Process: RNA splicing [UNKNOWN]
    spliceosomal snRNP assembly [UNKNOWN]
    Molecular Function: protein binding [UNKNOWN]
    histone pre-mRNA DCP binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ECSLQNGRIF IGTFKAFDKH MNLILCDCDE FRKIKPKNSK QAEREEKRVL GLVLLRGENL  60
   61 VSMTVEGPPP KDTGIARVPL AGAAGGPGIG RAAGRGIPAG VPMPQAPAGL AGPVRGVGGP 120
  121 SQQVMTPQGR GTVAAAAAAA TASIAGAPTQ YPPGRGGPPP PMGRGAPPPG MMGPPPGMRP 180
  181 PMGPPMGIPP GRGTPMGMPP PGMRPPPPGM RGLL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data



    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.78

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle