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Protein Overview: RPOC_BACAN

General Information:
Name(s) found: RPOC_BACAN [Swiss-Prot]
Description(s) found:
Found 4 descriptions.
SHOW ALL
  • DNA-directed RNA polymerase subunit beta' OS=Bacillus anthracis GN=rpoC PE=3 SV=3 [Swiss-Prot]
    • Organism: Bacillus anthracis
    Length: 1203 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDVNNFEYM KIGLASPDKI RSWSYGEVKK PETINYRTLK PEKDGLFCER IFGPQKDWEC  60
   61 HCGKYKRVRY KGVVCDRCGV EVTRAKVRRE RMGHIELAAP VSHIWYFKGI PSRMGLVLDM 120
  121 SPRALEEVIY FASYVVTESG DTPLDKKQLL SEKEYRAYRD RYGSTFQAAM GAEAIKKLLQ 180
  181 DIDLDKEVDF LKEELKTAQG QRRTRAIKRL EVLEAFRNSG NEPSWMILDV LPVIPPELRP 240
  241 MVQLDGGRFA TSDLNDLYRR VINRNNRLKR LLDLGAPSII VQNEKRMLQE AVDALIDNGR 300
  301 RGRPVTGPGN RPLKSLSHML KGKQGRFRQN LLGKRVDYSG RSVIVVGPNL KMYQCGLPKE 360
  361 MALELFKPFV MKELVEKGLA HNIKSAKRKI ERVQPEVWDV LESVIKEHPV LLNRAPTLHR 420
  421 LGIQAFEPTL VEGRAIRLHP LVCTAYNADF DGDQMAVHVP LSSEAQAEAR LLMLAAQNIL 480
  481 NPKDGKPVVT PSQDMVLGNY YLTLEREGAI GEGMVFKDAN EALLAYQNGY VHLHTRVAVA 540
  541 ASAVNNVTFT EEQKNMLLLT TVGKLIFNEI LPESFPYINE PTNSNLEKET PAKYFVEKGA 600
  601 NIKEIIASRE EVAPFSKKIL GNIIAEVFKR FKITETSRML DRMKNLGFKY STKAGITVGV 660
  661 SDILVLGEKD EILHEAQAKV DNVIKQFRRG LITEEERYDR VISIWSNAKD VIQGKLMKSL 720
  721 NKRNPIFMMS DSGARGNASN FTQLAGMRGL MANPSGRIIE LPIKSSFREG LTVLEYFIST 780
  781 HGARKGLADT ALKTADSGYL TRRLVDVAQD VIVREDDCGT DRGLLIGAIK EGNEVIESLY 840
  841 DRLVGRFARK TVKHPETGEV LVAENQLITE DIAHIVENSG VETVNIRSAF TCNTRHGVCK 900
  901 KCYGRNLATG TDVEVGEAVG IIAAQSIGEP GTQLTMRTFH TGGVAGDDIT QGLPRIQEIF 960
  961 EARNPKGQAV ISEIDGVIAA INDVKDRQEV VVQGEVEART YAIPYGARLK VIPGQKISHG1020
 1021 KELTEGSIDP KELLKVTDIT AVQEYLLREV QKVYRMQGVE IGDKHVEVMV RQMLRKVRVS1080
 1081 DAGETDVLPG TLLDIHQFTD ANAKVLLQGK QPATARPVLL GITKASLETD SFLSAASFQE1140
 1141 TTRVLTDAAI KGKRDELLGL KENVIIGKLV PAGTGMNRYR KVDLVKTTQD DMNVENDEVY1200
 1201 VEQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..1203] PSI-BLAST 1000.0 No description for 2ghoD was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA-directed RNA polymerase activity
    		•  10.2021663255698 bayes_pls_golite062009
  • RNA polymerase activity
    		•  10.2021663255698 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  7.6240729546188 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  5.44374972993429 bayes_pls_golite062009
  • transferase activity
    		•  4.83218811360621 bayes_pls_golite062009
  • transcription regulator activity
    		•  2.34884279395902 bayes_pls_golite062009
  • binding
    		•  2.25732797427964 bayes_pls_golite062009
  • DNA binding
    		•  2.02586687916169 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.91447180328254 bayes_pls_golite062009
  • catalytic activity
    		•  1.36406839864424 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  1.10272288118631 bayes_pls_golite062009
  • protein binding
    		•  0.251709363216351 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle