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Protein Overview: RLUD_ECOLI

General Information:
Name(s) found: RLUD_ECOLI [Swiss-Prot]
Description(s) found:
Found 5 descriptions.
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  • (P33643) Ribosomal large subunit pseudouridine synthase D (EC 5.4.99.-) (rRNA-uridine isomerase D) (rRNA pseudouridylate synthase D) [Swiss-Prot]
    • Organism: Escherichia coli
    Length: 325 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AQRVQLTATV SENQLGQRLD QALAEMFPDY SRSRIKEWIL DQRVLVNGKV CDKPKEKVLG  60
   61 GEQVAINAEI EEEARFEPQD IPLDIVYEDE DIIIINKPRD LVVHPGAGNP DGTVLNALLH 120
  121 YYPPIADVPR AGIVHRLDKD TTGLMVVAKT VPAQTRLVES LQRREITREY EAVAIGHMTA 180
  181 GGTVDEPISR HPTKRTHMAV HPMGKPAVTH YRIMEHFRVH TRLRLRLETG RTHQIRVHMA 240
  241 HITHPLVGDP VYGGRPRPPK GASEAFISTL RKFDRQALHA TMLRLYHPIS GIEMEWHAPI 300
  301 PQDMVELIEV MRADFEEHKD EVDWL

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Noble WS, et al. (2009) Manuscript in preparation. RLUD_ECOLI gi|189095939, gi...

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..325] PSI-BLAST 95.045757 Structure of the catalytic domain of 23S rRNA pseudouridine synthase RluD

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • pseudouridine synthase activity
    		•  5.60483019625575 bayes_pls_golite062009
  • intramolecular transferase activity
    		•  4.62815459483632 bayes_pls_golite062009
  • isomerase activity
    		•  3.43067391737824 bayes_pls_golite062009
  • catalytic activity
    		•  2.39224964671205 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle