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Protein Overview: RL25_ECOLI

General Information:
Name(s) found: RL25_ECOLI [Swiss-Prot]
Description(s) found:
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  • gi|83754119|pdb|2AWB|V Chain V, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli At 3.5 A Resolution. This File Contains The 50s Subunit Of The Second 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described [NCBI NR]
  • gi|83754063|pdb|2AW4|V Chain V, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli At 3.5 A Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Rema [NCBI NR]
  • pir||R5EC25 ribosomal protein L25 [validated] - Escherichia coli (strain K-12) [NCBI NR]
  • gi|6730329|pdb|1DFU|P Chain P, Crystal Structure Of E.Coli Ribosomal Protein L25 Complexed With A 5s Rrna Fragment At 1.8 A Resolution [NCBI NR]
  • gi|6573331|pdb|1D6K|A Chain A, Nmr Solution Structure Of The 5s Rrna E-LoopL25 COMPLEX [NCBI NR]
  • gi|60393658|sp|P68919.1|RL25_ECOLI RecName: Full=50S ribosomal protein L25 [NCBI NR]
  • gi|33357948|pdb|1P86|T Chain T, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Initiation-Like State Of E. Coli 70s Ribosome [NCBI NR]
  • gi|33357920|pdb|1P85|T Chain T, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome [NCBI NR]
  • gi|28373738|pdb|1ML5|VV Chain v, Structure Of The E. Coli Ribosomal Termination Complex With Release Factor 2 [NCBI NR]
  • gi|229550|prf||754714A ribosomal protein L25 [NCBI NR]
  • gi|227856|prf||1712317A ribosomal protein L25 [NCBI NR]
  • gi|224510751|pdb|3FIK|V Chain V, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 50s Subunit. [NCBI NR]
  • gi|216640|dbj|BAA02585.1| ribosomal protein L25 [Escherichia coli] [NCBI NR]
  • gi|209870355|pdb|3BBX|V Chain V, The Hsp15 Protein Fitted Into The Low Resolution Cryo-Em Map Of The 50s.Nc-Trna.Hsp15 Complex [NCBI NR]
  • gi|209765904|gb|ACI81264.1| 50S ribosomal subunit protein L25 [Escherichia coli] [NCBI NR]
  • gi|209765898|gb|ACI81261.1| 50S ribosomal subunit protein L25 [Escherichia coli] [NCBI NR]
  • gi|197107354|pdb|3DF4|V Chain V, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Hygromycin B. This File Contains The 50s Subunit Of The Second 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. [NCBI NR]
  • gi|197107302|pdb|3DF2|V Chain V, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Hygromycin B. This File Contains The 50s Subunit Of The First 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. [NCBI NR]
  • gi|169404604|pdb|2RDO|V Chain V, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound [NCBI NR]
  • gi|168988783|pdb|2VHN|V Chain V, Structure Of Pdf Binding Helix In Complex With The Ribosome. (Part 2 Of 4) [NCBI NR]
  • gi|168988752|pdb|2VHM|V Chain V, Structure Of Pdf Binding Helix In Complex With The Ribosome (Part 1 Of 4) [NCBI NR]
  • gi|158431459|pdb|2Z4N|V Chain V, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Paromomycin And Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The Second 70s Ribosome, With Paromomycin And Rrf Bou [NCBI NR]
  • gi|158431406|pdb|2Z4L|V Chain V, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Paromomycin And Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The First 70s Ribosome, With Paromomycin And Rrf Boun [NCBI NR]
  • gi|158430106|pdb|2QBK|V Chain V, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin And Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The Second 70s Ribosome, With Gentamicin And Rrf Bound [NCBI NR]
  • gi|158430053|pdb|2QBI|V Chain V, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin And Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The First 70s Ribosome, With Gentamicin And Rrf Bound. [NCBI NR]
  • gi|158430000|pdb|2QBG|V Chain V, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The Second 70s Ribosome, With Rrf Bound. The Entire Crystal Structure [NCBI NR]
  • gi|158429947|pdb|2QBE|V Chain V, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Ribosome Recycling Factor (Rrf). This File Contains The 50s Subunit Of The First 70s Ribosome, With Rrf Bound. The Entire Crystal Structure [NCBI NR]
  • gi|158429895|pdb|2QBC|V Chain V, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin. This File Contains The 50s Subunit Of The Second 70s Ribosome, With Gentamicin Bound. The Entire Crystal Structure Contains Two [NCBI NR]
  • gi|158429843|pdb|2QBA|V Chain V, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Gentamicin. This File Contains The 50s Subunit Of The First 70s Ribosome, With Gentamicin Bound. The Entire Crystal Structure Contains Two 7 [NCBI NR]
  • gi|158429785|pdb|2QAO|V Chain V, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Neomycin. This File Contains The 50s Subunit Of The Second 70s Ribosome, With Neomycin Bound. The Entire Crystal Structure Contains Two 70s [NCBI NR]
  • gi|158429733|pdb|2QAM|V Chain V, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Neomycin. This File Contains The 50s Subunit Of The First 70s Ribosome, With Neomycin Bound. The Entire Crystal Structure Contains Two 70s R [NCBI NR]
  • gi|157884251|pdb|487D|N Chain N, Seven Ribosomal Proteins Fitted To A Cryo-Electron Microscopic Map Of The Large 50s Subunit At 7.5 Angstroms Resolution [NCBI NR]
  • gi|157836214|pdb|2QP1|V Chain V, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Spectinomycin And Neomycin. This File Contains The 50s Subunit Of The Second 70s Ribosome, With Neomycin Bound. The Entire Crystal Structure [NCBI NR]
  • gi|157836162|pdb|2QOZ|V Chain V, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Spectinomycin And Neomycin. This File Contains The 50s Subunit Of The First 70s Ribosome, With Neomycin Bound. The Entire Crystal Structure [NCBI NR]
  • gi|157836058|pdb|2QOV|V Chain V, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With Spectinomycin. This File Contains The 50s Subunit Of The First 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. [NCBI NR]
  • gi|14278052|pdb|1GIY|V Chain V, Crystal Structure Of The Ribosome At 5.5 A Resolution. This File, 1giy, Contains The 50s Ribosome Subunit. The 30s Ribosome Subunit, Three Trna, And Mrna Molecules Are In The File 1gix [NCBI NR]
  • gi|119390366|pdb|2J28|V Chain V, Model Of E. Coli Srp Bound To 70s Rncs [NCBI NR]
  • gi|118138166|pdb|2I2V|V Chain V, Crystal Structure Of Ribosome With Messenger Rna And The Anticodon Stem-Loop Of P-Site Trna. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described [NCBI NR]
  • gi|118138112|pdb|2I2T|V Chain V, Crystal Structure Of Ribosome With Messenger Rna And The Anticodon Stem-Loop Of P-Site Trna. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described [NCBI NR]
  • gi|116667505|pdb|2GYC|T Chain T, Structure Of The 50s Subunit Of A Secm-Stalled E. Coli Ribosome Complex Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1143 [NCBI NR]
  • gi|116667453|pdb|2GYA|T Chain T, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 [NCBI NR]
  • gi|116666624|pdb|1VS8|V Chain V, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains [NCBI NR]
  • gi|116666572|pdb|1VS6|V Chain V, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains [NCBI NR]
  • 50S ribosomal protein L25 - Escherichia coli [Swiss-Prot]
  • 50S ribosomal subunit protein L25 [Escherichia coli K12]gi|30063628|ref|NP_837799.1| 50S ribosomal subunit protein L25 [Shigella flexneri 2a str. 2457T]gi|30041881|gb|AAP17608.1| 50S ribosomal subunit protein L25 [Shigella flexneri 2a str. 2457T]gi|178 [nrdb_11152004_Chlamydomonas]
  • 50S ribosomal protein L25 [NCBI-RefSeq_human_na_08-09-2006_reversed.fasta]
  • Chain V, Crystal Structure Of Ribosome With Messenger Rna And The Anticodon Stem-Loop Of P-Site Trna. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. [nr-271106-contam.fasta]
  • Chain V, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is [nr-271106-contam.fasta]
  • Chain A, Nmr Solution Structure Of The 5s Rrna E-LoopL25 COMPLEX [nr-271106-contam.fasta]
  • ribosomal protein L25 [nr-271106-contam.fasta]
  • ribosomal protein L25 [Escherichia coli] [nr-271106-contam.fasta]
  • Chain V, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli At 3.5 A Resolution. This File Contains The 50s Subunit Of The Second 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. [nr-271106-contam.fasta]
  • Chain T, Structure Of The 50s Subunit Of A Secm-Stalled E. Coli Ribosome Complex Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1143 [nr-271106-contam.fasta]
  • Chain T, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome [nr-271106-contam.fasta]
  • Chain v, Structure Of The E. Coli Ribosomal Termination Complex With Release Factor 2 [nr-271106-contam.fasta]
  • Chain V, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is [nr-271106-contam.fasta]
  • Chain T, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Initiation-Like State Of E. Coli 70s Ribosome [nr-271106-contam.fasta]
  • Chain P, Crystal Structure Of E.Coli Ribosomal Protein L25 Complexed With A 5s Rrna Fragment At 1.8 A Resolution [nr-271106-contam.fasta]
  • Chain V, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli At 3.5 A Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. [nr-271106-contam.fasta]
  • Chain T, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 [nr-271106-contam.fasta]
  • 50S ribosomal protein L25 OS=Escherichia coli (strain K12) GN=rplY PE=1 SV=1 [uniprot-Ecoli-reviewed-110511.fasta]
    • Organism: Escherichia coli
    Length: 94 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTINAEVRK EQGKGASRRL RAANKFPAII YGGKEAPLAI ELDHDKVMNM QAKAEFYSEV  60
   61 LTIVVDGKEI KVKAQDVQRH PYKPKLQHID FVRA

    Protein Complex Data

      PUBLICATION TOPOLOGY COCOMPLEXED PROTEINS
    View Details Noble WS, et al. (2009) Manuscript in preparation. RL25_ECOLI gi|189095939, gi...

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..94] PSI-BLAST 31.69897 Ribosomal protein L25

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structural constituent of ribosome
    		•  3.20160657268678 bayes_pls_golite062009
  • structural molecule activity
    		•  2.91807402311048 bayes_pls_golite062009
  • 5S rRNA binding
    		•  1.81739845276686 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.69231105225212 bayes_pls_golite062009
  • binding
    		•  1.17696230219913 bayes_pls_golite062009
  • RNA binding
    		•  1.10721612326963 bayes_pls_golite062009
  • rRNA binding
    		•  1.09906733598731 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle