YRC Public Data Repository - Protein Structure Prediction

Protein:	RL25_ECOLI
Organism:	Escherichia coli
Length:	94 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL25_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|114773564, gi... - gi\|114773564\|ref\|ZP_01450662.1\| ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 [alpha proteoba... gi\|114773564 - gi\|114773564\|ref\|ZP_01450662.1\| ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 [alpha proteoba... gi\|221135305 - gi\|221135305\|ref\|ZP_03561608.1\| 50S ribosomal protein L25/general stress protein Ctc [Glaciecola sp....	142.0	[0..1]	[93..5]
RL25_ALTMD - 50S ribosomal protein L25 OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=rplY PE=3 SV... RL25_ALTMD - 50S ribosomal protein L25 OS=Alteromonas mediterranea (strain DSM 17117 / CIP 110805 / LMG 28347 / D...	139.0	[0..1]	[93..5]
gi\|110806164, gi... - gi\|110806164\|ref\|YP_689684.1\| 50S ribosomal protein L25 [Shigella flexneri 5 str. 8401], gi\|11061571...	139.0	[0..1]	[94..25]
gi\|26248568, gi\|... - gi\|26248568\|ref\|NP_754608.1\| 50S ribosomal protein L25 [Escherichia coli CFT073], gi\|26108973\|gb\|AAN... gi\|91211475, gi\|... - gi\|91211475\|ref\|YP_541461.1\| 50S ribosomal protein L25 [Escherichia coli UTI89], gi\|91073049\|gb\|ABE0...	138.0	[0..1]	[94..33]
RL25_PSEA6 - 50S ribosomal protein L25 OS=Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) GN=rplY PE=3 S...	138.0	[0..1]	[93..5]
gi\|85692926, gi\|... - gi\|85713257\|ref\|ZP_01044282.1\| Ribosomal protein L25 [Idiomarina baltica OS145], gi\|85692926\|gb\|EAQ3...	135.0	[0..2]	[93..6]
RL25_HAHCH - 50S ribosomal protein L25 OS=Hahella chejuensis (strain KCTC 2396) GN=rplY PE=3 SV=1	135.0	[0..2]	[93..5]
gi\|42631535 - gi\|42631535\|ref\|ZP_00157073.1\| COG1825: Ribosomal protein L25 (general stress protein Ctc) [Haemophi... gi\|145641796, gi... - gi\|145641796\|ref\|ZP_01797372.1\| 50S ribosomal protein L25 [Haemophilus influenzae R3021], gi\|1449834... gi\|145639243, gi... - gi\|145639243\|ref\|ZP_01794849.1\| 50S ribosomal protein L25 [Haemophilus influenzae PittII], gi\|145271... gi\|145273610, gi... - gi\|145641796\|ref\|ZP_01797372.1\| 50S ribosomal protein L25 [Haemophilus influenzae R3021], gi\|1456309... gi\|144979544, gi... - gi\|145627769\|ref\|ZP_01783570.1\| 50S ribosomal protein L25 [Haemophilus influenzae 22.1-21], gi\|14497...	135.0	[0..2]	[94..3]
SO2112 - ribosomal protein L25 gi\|24373672, gi\|... - gi\|24373672\|ref\|NP_717715.1\| ribosomal protein L25 [Shewanella oneidensis MR-1], gi\|24348022\|gb\|AAN5...	135.0	[0..2]	[94..56]
RL25_COLP3 - 50S ribosomal protein L25 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=rplY PE=3 SV=1	134.0	[0..1]	[93..4]

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Predicted Domain #1

Region A:
Residues: [1-94]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTINAEVRK EQGKGASRRL RAANKFPAII YGGKEAPLAI ELDHDKVMNM QAKAEFYSEV  60
   61 LTIVVDGKEI KVKAQDVQRH PYKPKLQHID FVRA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.69897
Match:	1b75A
Description:	Ribosomal protein L25
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	3.20160657268678	bayes_pls_golite062009
structural molecule activity	2.91807402311048	bayes_pls_golite062009
5S rRNA binding	1.81739845276686	bayes_pls_golite062009
nucleic acid binding	1.69231105225212	bayes_pls_golite062009
binding	1.17696230219913	bayes_pls_golite062009
RNA binding	1.10721612326963	bayes_pls_golite062009
rRNA binding	1.09906733598731	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: