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Protein Overview: RIBF_ECOLI

General Information:
Name(s) found: RIBF_ECOLI [Swiss-Prot]
Description(s) found:
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  • gi|84027896|sp|P0AG40.1|RIBF_ECOLI RecName: Full=Riboflavin biosynthesis protein ribF; Includes: RecName: Full=Riboflavin kinase; AltName: Full=Flavokinase; Includes: RecName: Full=FMN adenylyltransferase; AltName: Full=FAD pyrophosphorylase; AltName: Ful [NCBI NR]
  • pir||QQECIL probable regulator ribF [similarity] - Escherichia coli (strain K-12) [NCBI NR]
  • pir||C85483 probable regulator ribF [imported] - Escherichia coli (strain O157:H7, substrain EDL933) [NCBI NR]
  • pir||D90632 probable regulator [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952) [NCBI NR]
  • gi|209747132|gb|ACI71873.1| putative regulator [Escherichia coli] [NCBI NR]
  • gi|209747130|gb|ACI71872.1| putative regulator [Escherichia coli] [NCBI NR]
  • gi|209747128|gb|ACI71871.1| putative regulator [Escherichia coli] [NCBI NR]
  • gi|209747126|gb|ACI71870.1| putative regulator [Escherichia coli] [NCBI NR]
  • gi|209747124|gb|ACI71869.1| putative regulator [Escherichia coli] [NCBI NR]
  • Riboflavin biosynthesis protein ribF [Includes: Riboflavin kinase (EC 2.7.1.26) (Flavokinase); FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase)] - Escherichia coli [Swiss-Prot]
  • bifunctional: flavokinase; FAD synthetase; flavokinase and FAD synthetase [Escherichia coli K12]gi|15829282|ref|NP_308055.1| putative regulator [Escherichia coli O157:H7]gi|30061593|ref|NP_835764.1| putative regulator [Shigella flexneri 2a str. 2457T]g [nrdb_11152004_Chlamydomonas]
  • Riboflavin biosynthesis protein ribF [Includes: Riboflavin kinase (Flavokinase); FMN adenylyltransferase (FAD pyrophosphorylase) (FAD synthetase)] [NCBI-RefSeq_human_na_08-09-2006_reversed.fasta]
  • Riboflavin biosynthesis protein ribF OS=Escherichia coli (strain K12) GN=ribF PE=1 SV=1 [uniprot-Ecoli-reviewed-110511.fasta]
  • Riboflavin biosynthesis protein RibF OS=Escherichia coli (strain K12) GN=ribF PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Escherichia coli
    Length: 313 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLIRGIHNL SQAPQEGCVL TIGNFDGVHR GHRALLQGLQ EEGRKRNLPV MVMLFEPQPL  60
   61 ELFATDKAPA RLTRLREKLR YLAECGVDYV LCVRFDRRFA ALTAQNFISD LLVKHLRVKF 120
  121 LAVGDDFRFG AGREGDFLLL QKAGMEYGFD ITSTQTFCEG GVRISSTAVR QALADDNLAL 180
  181 AESLLGHPFA ISGRVVHGDE LGRTIGFPTA NVPLRRQVSP VKGVYAVEVL GLGEKPLPGV 240
  241 ANIGTRPTVA GIRQQLEVHL LDVAMDLYGR HIQVVLRKKI RNEQRFASLD ELKAQIARDE 300
  301 LTAREFFGLT KPA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..313] PSI-BLAST 50.154902 Crystal structure of a flavin binding protein from Thermotoga Maritima, TM379

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.84668360172717 bayes_pls_golite062009
  • kinase activity
    		•  0.7211756790235 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  0.70842009684549 bayes_pls_golite062009
  • riboflavin kinase activity
    		•  0.642106611415199 bayes_pls_golite062009
  • ligase activity
    		•  0.41353894226697 bayes_pls_golite062009
  • ligase activity, forming carbon-oxygen bonds
    		•  0.1911539125531 bayes_pls_golite062009
  • ligase activity, forming aminoacyl-tRNA and related compounds
    		•  0.1911539125531 bayes_pls_golite062009
  • aminoacyl-tRNA ligase activity
    		•  0.178548924377401 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle