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Protein Overview: RFAQ_ECOLI

General Information:
Name(s) found: RFAQ_ECOLI [Swiss-Prot]
Description(s) found:
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  • gi|548728|sp|P25742.2|RFAQ_ECOLI RecName: Full=Lipopolysaccharide core biosynthesis glycosyltransferase rfaQ [NCBI NR]
  • gi|466770|gb|AAB18609.1| rfaQ [Escherichia coli str. K-12 substr. MG1655] [NCBI NR]
  • pir||S27560 lipopolysaccharide heptosyltransferase (EC 2.4.99.-) II rfaQ [similarity] - Escherichia coli (strain K-12) [NCBI NR]
  • gi|146651|gb|AAA24081.1| lipopolysaccharide core biosynthesis protein [Escherichia coli] [NCBI NR]
  • gi|146542|gb|AAA03744.1| rfaQ [Escherichia coli] [NCBI NR]
  • Lipopolysaccharide core biosynthesis glycosyltransferase rfaQ (EC 2.-.-.-) - Escherichia coli [Swiss-Prot]
  • lipopolysaccharide core biosynthesis; lipopolysaccharide core biosynthesis; modification of heptose region of core [Escherichia coli K12]gi|1790062|gb|AAC76656.1| lipopolysaccharide core biosynthesis; lipopolysaccharide core biosynthesis; modification of [nrdb_11152004_Chlamydomonas]
  • Lipopolysaccharide core biosynthesis glycosyltransferase rfaQ [NCBI-RefSeq_human_na_08-09-2006_reversed.fasta]
  • rfaQ [Escherichia coli] [NCBI-RefSeq_human_na_08-09-2006_reversed.fasta]
  • lipopolysaccharide core biosynthesis protein [nr-271106-contam.fasta]
  • Lipopolysaccharide core heptosyltransferase rfaQ OS=Escherichia coli (strain K12) GN=rfaQ PE=1 SV=2 [uniprot-Ecoli-reviewed-110511.fasta]
  • Lipopolysaccharide core heptosyltransferase RfaQ OS=Escherichia coli (strain K12) GN=rfaQ PE=1 SV=2 [uniprot_sprot.fasta.20160308]
    • Organism: Escherichia coli
    Length: 344 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRYHGDMLLT TPVISTLKQN YPDAKIDMLL YQDTIPILSE NPEINALYGI SNKGAGTFDK  60
   61 IKNVLSLIKT LRANNYDLVI NLTDQWMVAL LVRCLPARMK ISQLYGHRQH GIWKKSFTHL 120
  121 APIHGTHIVE RNLSVLEPLG ITDFYTDTTM SYAEDCWKKM RRELDALGVK DHYVVIQPTA 180
  181 RQIFKCWDND KFSKVIDALQ QRGYQVVLTC GPSADDLACV DEIARGCETK PITGLAGKTR 240
  241 FPELGALIDH AVLFIGVDSA PGHIAAAVKT PVISLFGATD HVFWRPWTEN IIQFWAGNYQ 300
  301 KMPTRHELDR NKKYLSVIPA EDVIAATEKL LPEDAPSADR NAQL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..344] PSI-BLAST 58.0 ADP-heptose LPS heptosyltransferase II

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • lipopolysaccharide heptosyltransferase activity
    		•  3.44180421678517 bayes_pls_golite062009
  • transferase activity, transferring hexosyl groups
    		•  3.04530122157712 bayes_pls_golite062009
  • catalytic activity
    		•  3.02192459767177 bayes_pls_golite062009
  • transferase activity, transferring glycosyl groups
    		•  2.94500176353224 bayes_pls_golite062009
  • glycogen phosphorylase activity
    		•  2.09116455393465 bayes_pls_golite062009
  • glucosyltransferase activity
    		•  1.8062586862583 bayes_pls_golite062009
  • transferase activity
    		•  1.67770954408305 bayes_pls_golite062009
  • UDP-N-acetylglucosamine 2-epimerase activity
    		•  1.63103907245982 bayes_pls_golite062009
  • UDP-glucosyltransferase activity
    		•  1.4199532885636 bayes_pls_golite062009
  • UDP-glycosyltransferase activity
    		•  1.30934991061674 bayes_pls_golite062009
  • glycogen (starch) synthase activity
    		•  0.435616523537281 bayes_pls_golite062009
  • phosphorylase activity
    		•  0.431662083250969 bayes_pls_golite062009
  • racemase and epimerase activity, acting on carbohydrates and derivatives
    		•  0.27693350081385 bayes_pls_golite062009
  • alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity
    		•  0.22009679964126 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle