YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: IHFB_ECOLI

General Information:
Name(s) found: IHFB_ECOLI [Swiss-Prot]
Description(s) found:
SHOW ONLY BEST
  • pir||IQECAB integration host factor beta chain - Escherichia coli (strain K-12) [NCBI NR]
  • gi|68304094|gb|AAY89705.1| IhfB [Escherichia coli] [NCBI NR]
  • gi|67466112|sp|P0A6Y1.1|IHFB_ECOLI RecName: Full=Integration host factor subunit beta; Short=IHF-beta [NCBI NR]
  • gi|414749|emb|CAA28557.1| IHF (AA 1-93) [Escherichia coli] [NCBI NR]
  • gi|34811470|pdb|1OWG|B Chain B, Crystal Structure Of Wt Ihf Complexed With An Altered H' Site (T44a) [NCBI NR]
  • pir||C90753 integration host factor (IHF) beta subunit [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952) [NCBI NR]
  • pir||A85617 integration host factor (IHF) beta subunit [imported] - Escherichia coli (strain O157:H7, substrain EDL933) [NCBI NR]
  • gi|209774866|gb|ACI85745.1| integration host factor (IHF) beta subunit [Escherichia coli] [NCBI NR]
  • gi|209774864|gb|ACI85744.1| integration host factor (IHF) beta subunit [Escherichia coli] [NCBI NR]
  • gi|209774862|gb|ACI85743.1| integration host factor (IHF) beta subunit [Escherichia coli] [NCBI NR]
  • gi|209774860|gb|ACI85742.1| integration host factor (IHF) beta subunit [Escherichia coli] [NCBI NR]
  • gi|209774858|gb|ACI85741.1| integration host factor (IHF) beta subunit [Escherichia coli] [NCBI NR]
  • gi|1942276|pdb|1IHF|B Chain B, Integration Host FactorDNA COMPLEX [NCBI NR]
  • gi|119389942|pdb|2HT0|B Chain B, Ihf Bound To Doubly Nicked Dna [NCBI NR]
  • Integration host factor subunit beta (IHF-beta) - Escherichia coli [Swiss-Prot]
  • integration host factor (IHF), beta subunit, site-specific recombination; integration host factor (IHF), beta subunit; site-specific recombination [Escherichia coli K12]gi|15830249|ref|NP_309022.1| integration host factor beta subunit [Escherichia coli O [nrdb_11152004_Chlamydomonas]
  • Integration host factor subunit beta (IHF-beta) [NCBI-RefSeq_human_na_08-09-2006_reversed.fasta]
  • Chain B, Crystal Structure Of An Ihf-Dna Complex: A Protein-Induced Dna U-Turn [nr-271106-contam.fasta]
  • IHF (AA 1-93) [Escherichia coli] [nr-271106-contam.fasta]
  • Chain B, Crystal Structure Of Wt Ihf Complexed With An Altered H' Site (T44a) [nr-271106-contam.fasta]
  • Integration host factor subunit beta OS=Escherichia coli (strain K12) GN=ihfB PE=1 SV=1 [uniprot-Ecoli-reviewed-110511.fasta]
    • Organism: Escherichia coli
    Length: 94 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKSELIERL ATQQSHIPAK TVEDAVKEML EHMASTLAQG ERIEIRGFGS FSLHYRAPRT  60
   61 GRNPKTGDKV ELEGKYVPHF KPGKELRDRA NIYG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..94] PSI-BLAST 29.154902 Integration host factor beta subunit (IHFB)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA binding
    		•  5.25387001942839 bayes_pls_golite062009
  • nucleic acid binding
    		•  5.15205953864352 bayes_pls_golite062009
  • binding
    		•  3.99545980559645 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.74311685689448 bayes_pls_golite062009
  • transcription activator activity
    		•  0.38454381783388 bayes_pls_golite062009
  • protein binding
    		•  0.262917207132993 bayes_pls_golite062009
  • transcription repressor activity
    		•  0.176747764275359 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle