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Protein Overview: FLIA_ECOLI

General Information:
Name(s) found: FLIA_ECOLI [Swiss-Prot]
Description(s) found:
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  • gi|84028138|sp|P0AEM6.1|FLIA_ECOLI RecName: Full=RNA polymerase sigma factor for flagellar operon; AltName: Full=Sigma-F factor; AltName: Full=Sigma-27; AltName: Full=Sigma-28 [NCBI NR]
  • gi|687650|gb|AAC43543.1| sigma F [NCBI NR]
  • gi|556180|gb|AAC37011.1| sigma factor 28 [Escherichia coli] [NCBI NR]
  • pir||E85809 RNA polymerase sigma factor for flagellar operon (Sigma-F factor) (Sigma-27) (Sigma-28) - Escherichia coli (strain O157:H7, substrain EDL933) [NCBI NR]
  • pir||E90961 RNA polymerase sigma factor for flagellar operon (Sigma-F factor) (Sigma-27) (Sigma-28) - Escherichia coli (strain O157:H7, substrain RIMD 0509952) [NCBI NR]
  • pir||JC4346 RNA polymerase sigma factor for flagellar operon (Sigma-F factor) (Sigma-27) (Sigma-28) - Escherichia coli (strain K-12) [NCBI NR]
  • gi|209748396|gb|ACI72505.1| transcription initiation factor alternative sigma factor 28 [Escherichia coli] [NCBI NR]
  • gi|209748394|gb|ACI72504.1| transcription initiation factor alternative sigma factor 28 [Escherichia coli] [NCBI NR]
  • gi|209748392|gb|ACI72503.1| transcription initiation factor alternative sigma factor 28 [Escherichia coli] [NCBI NR]
  • dbj|BAA15749.1| RNA polymerase sigma factor for flagellar operon (Sigma-F factor) (Sigma-27) (Sigma-28). [Escherichia coli] [NCBI NR]
  • gi|1736581|dbj|BAA15742.1| RNA polymerase, sigma 28 (sigma F) factor [Escherichia coli W3110] [NCBI NR]
  • RNA polymerase sigma factor for flagellar operon (Sigma-F factor) (Sigma-27) (Sigma-28) - Escherichia coli [Swiss-Prot]
  • flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons; sigma F (sigma 28) factor of RNA polymerase, transcription of late flagellar genes (class 3a and 3b operons) [Escherichia coli K12]gi|15831915|ref|NP_310688.1| transcri [nrdb_11152004_Chlamydomonas]
  • RNA polymerase sigma factor for flagellar operon (Sigma-F factor) (Sigma-27) (Sigma-28) [NCBI-RefSeq_human_na_08-09-2006_reversed.fasta]
  • sigma F [nr-271106-contam.fasta]
  • sigma factor 28 [nr-271106-contam.fasta]
  • RNA polymerase sigma factor for flagellar operon OS=Escherichia coli (strain K12) GN=fliA PE=3 SV=1 [uniprot-Ecoli-reviewed-110511.fasta]
  • RNA polymerase sigma factor FliA OS=Escherichia coli (strain K12) GN=fliA PE=1 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Escherichia coli
    Length: 239 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSLYTAEGV MDKHSLWQRY VPLVRHEALR LQVRLPASVE LDDLLQAGGI GLLNAVERYD  60
   61 ALQGTAFTTY AVQRIRGAML DELRSRDWVP RSVRRNAREV AQAIGQLEQE LGRNATETEV 120
  121 AERLGIDIAD YRQMLLDTNN SQLFSYDEWR EEHGDSIELV TDDHQRENPL QQLLDSNLRQ 180
  181 RVMEAIETLP EREKLVLTLY YQEELNLKEI GAVLEVGESR VSQLHSQAIK RLRTKLGKL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..239] PSI-BLAST 30.522879 Cocrystal structure of the flagellar sigma/anti-sigma complex, Sigma-28/FlgM

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transcription initiation factor activity
    		•  5.71806750193815 bayes_pls_golite062009
  • sigma factor activity
    		•  5.58029806879061 bayes_pls_golite062009
  • transcription regulator activity
    		•  3.67872017549582 bayes_pls_golite062009
  • binding
    		•  0.503184853376433 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle