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Protein Overview: FIMD_ECOLI

General Information:
Name(s) found: FIMD_ECOLI [Swiss-Prot]
Description(s) found:
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  • gi|729491|sp|P30130.2|FIMD_ECOLI RecName: Full=Outer membrane usher protein fimD; Flags: Precursor [NCBI NR]
  • gi|537158|gb|AAA97213.1| CG Site No. 18349 [Escherichia coli] [NCBI NR]
  • pir||S56542 outer membrane usher protein fimD precursor - Escherichia coli (strain K-12) [NCBI NR]
  • Outer membrane usher protein fimD precursor - Escherichia coli [Swiss-Prot]
  • outer membrane protein; export and assembly of type 1 fimbriae, interrupted; split gene (fragments 1and 2), outer membrane protein, export and assembly of type 1 fimbriae [Escherichia coli K12]gi|1790772|gb|AAC77273.1| outer membrane protein; export and [nrdb_11152004_Chlamydomonas]
  • Outer membrane usher protein fimD precursor [NCBI-RefSeq_human_na_08-09-2006_reversed.fasta]
  • CG Site No. 18349 [Escherichia coli] [NCBI-RefSeq_human_na_08-09-2006_reversed.fasta]
  • Outer membrane usher protein fimD OS=Escherichia coli (strain K12) GN=fimD PE=1 SV=2 [uniprot-Ecoli-reviewed-110511.fasta]
  • Outer membrane usher protein FimD OS=Escherichia coli (strain K12) GN=fimD PE=1 SV=2 [uniprot_sprot.fasta.20160308]
    • Organism: Escherichia coli
    Length: 878 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYLNLRLYQ RNTQCLHIRK HRLAGFFVRL VVACAFAAQA PLSSADLYFN PRFLADDPQA  60
   61 VADLSRFENG QELPPGTYRV DIYLNNGYMA TRDVTFNTGD SEQGIVPCLT RAQLASMGLN 120
  121 TASVAGMNLL ADDACVPLTT MVQDATAHLD VGQQRLNLTI PQAFMSNRAR GYIPPELWDP 180
  181 GINAGLLNYN FSGNSVQNRI GGNSHYAYLN LQSGLNIGAW RLRDNTTWSY NSSDRSSGSK 240
  241 NKWQHINTWL ERDIIPLRSR LTLGDGYTQG DIFDGINFRG AQLASDDNML PDSQRGFAPV 300
  301 IHGIARGTAQ VTIKQNGYDI YNSTVPPGPF TINDIYAAGN SGDLQVTIKE ADGSTQIFTV 360
  361 PYSSVPLLQR EGHTRYSITA GEYRSGNAQQ EKTRFFQSTL LHGLPAGWTI YGGTQLADRY 420
  421 RAFNFGIGKN MGALGALSVD MTQANSTLPD DSQHDGQSVR FLYNKSLNES GTNIQLVGYR 480
  481 YSTSGYFNFA DTTYSRMNGY NIETQDGVIQ VKPKFTDYYN LAYNKRGKLQ LTVTQQLGRT 540
  541 STLYLSGSHQ TYWGTSNVDE QFQAGLNTAF EDINWTLSYS LTKNAWQKGR DQMLALNVNI 600
  601 PFSHWLRSDS KSQWRHASAS YSMSHDLNGR MTNLAGVYGT LLEDNNLSYS VQTGYAGGGD 660
  661 GNSGSTGYAT LNYRGGYGNA NIGYSHSDDI KQLYYGVSGG VLAHANGVTL GQPLNDTVVL 720
  721 VKAPGAKDAK VENQTGVRTD WRGYAVLPYA TEYRENRVAL DTNTLADNVD LDNAVANVVP 780
  781 TRGAIVRAEF KARVGIKLLM TLTHNNKPLP FGAMVTSESS QSSGIVADNG QVYLSGMPLA 840
  841 GKVQVKWGEE ENAHCVANYQ LPPESQQQLL TQLSAECR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..173] PSI-BLAST 35.0 Crystal Structure of the Ternary Complex of FIMD (N-Terminal Domain) with FIMC and the Pilin Domain of FIMH
    2 View Details [174..878] FFAS03 0.965 Ferric hydroxamate uptake receptor FhuA

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • fimbrial usher porin activity
    		•  3.07403393180075 bayes_pls_golite062009
  • porin activity
    		•  1.02120594936422 bayes_pls_golite062009
    2
    Term Confidence Notes
  • binding
    		•  0.273814039678033 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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