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Protein Overview: SO9023

General Information:
Name(s) found: SO9023 [shew_pnnl_plus_contams_psm.fasta]
Description(s) found:
  • transposase IS91 family, putative (SO1511,SO2035,SO2165,SO2212) [shew_pnnl_plus_contams_psm.fasta]
    • Organism: Shewanella oneidensis
    Length: 372 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSYHLSDI LQQHLAHYQQ QHKLTEQQAL VCQHIQQCRT QTLGMQHWRC DTCQYEQQVC  60
   61 CSCGDRHCPR CQGRQTQAWI ATQQAQVLPC RYFHLVFTLP HELNILAHYA AKPLYSALFE 120
  121 SVWQTLAQFG MKRKHLQGQL GCTMVLHTWG QTLSQHIHLH CLIPGGVVTS AGDWHGVKTD 180
  181 YLFPVKALST VYRAKLLRAL RQHELAIPAA ETLMAKPWCV YSKACLSRAE TVVEYLGRYT 240
  241 RKGMLHESRI AEVTADHVRF NYKDYRDGQQ HKQMWLSCDE FIRRYLLHVL PKGLMRVRHF 300
  301 GFLANACRRK KLALILRQLR KPQVVLASPL VKKDCLWSCP QCQLGHLQFI GLIRPQSVVM 360
  361 INSQGQPVRM SG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..66] MSA 7.074997 View MSA. No confident structure predictions are available.
    2 View Details [67..372] FFAS03 1.85 Conjugative Relaxase TrwC in complex with OriT Dna. Metal-free structure.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle