YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|24373595, gi\|...
Organism:	Shewanella oneidensis MR-1
Length:	372 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|24373595, gi|....

Description	E-value	Query Range	Subject Range
gi\|160860362, gi... - gi\|160875847\|ref\|YP_001555163.1\| putative transposase [Shewanella baltica OS195], gi\|160875128\|ref\|Y...	438.0	[0..1]	[372..1]
Y4QJ_RHISN - Putative transposase y4qJ OS=Rhizobium sp. (strain NGR234) GN=NGR_a01880 PE=3 SV=1	426.0	[0..2]	[353..3]
gi\|1098131, gi\|5... - gi\|557886\|gb\|AAA50501.1\| transposase, gi\|1098131\|prf\|\|2115270C transposase	425.0	[0..5]	[353..20]
gi\|14028104, gi\|... - gi\|14028104\|dbj\|BAB54696.1\| transposase [Mesorhizobium loti MAFF303099], gi\|13488148\|ref\|NP_085855.1... gi\|14028104 - gi\|14028104\|dbj\|BAB54696.1\| transposase [Mesorhizobium loti MAFF303099]	424.0	[0..7]	[361..1]
gi\|116252426, gi... - gi\|116255539\|ref\|YP_771372.1\| putative transposase for insertion sequence element [Rhizobium legumin...	424.0	[0..2]	[353..3]
gi\|82720656, gi\|... - gi\|82743747\|ref\|ZP_00906374.1\| transposase, IS91 family, putative [Shewanella sp. W3-18-1], gi\|82741...	421.0	[0..1]	[372..1]
SO2527 - transposase IS91 family, putative gi\|24348548, gi\|... - gi\|24374070\|ref\|NP_718113.1\| IS91 family transposase [Shewanella oneidensis MR-1], gi\|24348548\|gb\|AA...	419.0	[0..1]	[342..1]

Back

Predicted Domain #1

Region A:
Residues: [1-66]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSYHLSDI LQQHLAHYQQ QHKLTEQQAL VCQHIQQCRT QTLGMQHWRC DTCQYEQQVC  60
   61 CSCGDR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [67-372]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HCPRCQGRQT QAWIATQQAQ VLPCRYFHLV FTLPHELNIL AHYAAKPLYS ALFESVWQTL  60
   61 AQFGMKRKHL QGQLGCTMVL HTWGQTLSQH IHLHCLIPGG VVTSAGDWHG VKTDYLFPVK 120
  121 ALSTVYRAKL LRALRQHELA IPAAETLMAK PWCVYSKACL SRAETVVEYL GRYTRKGMLH 180
  181 ESRIAEVTAD HVRFNYKDYR DGQQHKQMWL SCDEFIRRYL LHVLPKGLMR VRHFGFLANA 240
  241 CRRKKLALIL RQLRKPQVVL ASPLVKKDCL WSCPQCQLGH LQFIGLIRPQ SVVMINSQGQ 300
  301 PVRMSG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.85
Match:	1omhA
Description:	Conjugative Relaxase TrwC in complex with OriT Dna. Metal-free structure.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits